SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14740 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr3:4952185-4953306 REVERSE LENGTH=343 | SoyBase | E_val: 3.00E-97 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR13793 | Panther | PHD FINGER PROTEINS | JGI | ISS | |
| PTHR13793:SF48 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| UniRef100_G7ZV42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PHD finger protein n=1 Tax=Medicago truncatula RepID=G7ZV42_MEDTR | SoyBase | E_val: 5.00E-115 | ISS |
| UniRef100_I1MI52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI52_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g27701 not represented in the dataset |
Glyma15g27701 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g211600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g27701.2 sequence type=transcript gene model=Glyma15g27701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTTTGAACTCCCGCCCTATTTTCAATTTCATTCATTCATCACTCTAAAAATTTCGCTTCCAATTATTTTCTCCCACCCTCCCAATTTCCCCTCCCCCTTTTTCGCTGAACCCGCTCCAATTCTCAAATCTCAATTCAAAAGAATCAAAACCCAAACTTCAAATTCGTTTCCCTTACAACACTTTCCCTTCTCAGTCAATTCCTCCTTCCACCACTTTCCCTCCCTTCTTCCTTCCTTTCAATGTTCCAACCTAACAACCCCAAAATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCAGTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTAGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAACCACACCCAAGTTTGGGAAAAGCAATCCGGGAAGTACAAAATTGTTGCTGTTGAAGATAAAAAGTAGCAAAAGTCTTGGTTTTTTTTTTTTTTTGAAACTGTTAGTTAATTAACCATCCTAGGGAAATTCAAAGTTAGTTACTTTTGAAGATCATTTGAATCAGTTGTAATTTTACTCTTCATAGCTGATAGCTTTTATGCTTTGTTTTAGTGCTCTAAATCTTCAGATGAAGACTGTTGCCGACAGTATGTGATCATTGTTACCTAAGAAGATTAACAGTTGAATTGTGATCAAATTGAGTTATTATAACAAAAAAGAAAAAAATTGAAAAAATTAATGTTGTAC
>Glyma15g27701.1 sequence type=CDS gene model=Glyma15g27701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCAACCTAACAACCCCAAAATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCAGTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTAGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAACCACACCCAAGTTTGGGAAAAGCAACAGCAATCCGGGAAGTACAAAATTGTTGCTGTTGAAGATAAAAAGTAG >Glyma15g27701.2 sequence type=CDS gene model=Glyma15g27701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCAACCTAACAACCCCAAAATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCAGTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTAGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAACCACACCCAAGTTTGGGAAAAGCAATCCGGGAAGTACAAAATTGTTGCTGTTGAAGATAAAAAGTAG
>Glyma15g27701.1 sequence type=predicted peptide gene model=Glyma15g27701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFQPNNPKMDSSTTFLNDLPPLKRLRLLQQQQQQKEEHQYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDLEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTAEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKNHTQVWEKQQQSGKYKIVAVEDKK* >Glyma15g27701.2 sequence type=predicted peptide gene model=Glyma15g27701 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFQPNNPKMDSSTTFLNDLPPLKRLRLLQQQQQQKEEHQYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDLEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTAEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKNHTQVWEKQSGKYKIVAVEDKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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