SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48750 | AT | Annotation by Michelle Graham. TAIR10: cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294 | SoyBase | E_val: 6.00E-89 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0006995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0008356 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asymmetric cell division | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0040020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meiosis | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0048229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gametophyte development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0010005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0594 | KOG | Protein kinase PCTAIRE and related kinases | JGI | ISS | |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_A8VFL5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CDC2 n=1 Tax=Glycine max RepID=A8VFL5_SOYBN | SoyBase | E_val: 8.00E-91 | ISS |
| UniRef100_UPI000233B2CB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B2CB related cluster n=1 Tax=unknown RepID=UPI000233B2CB | SoyBase | E_val: 0 | ISS |
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Glyma15g27600 not represented in the dataset |
Glyma15g27600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g211100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g27600.2 sequence type=CDS gene model=Glyma15g27600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGTGAAGATATTGGATGTGGCGGCGGAGGGCGGCTACGGGCGGGTGTTCCGGTGCCTCGACGTCCACACGGGCGCCCTCGTGGCCATGAAGCAGATCACGATGGTCAGGTTGAGCCAGGGCATTCCGGCGCAGATCATCCGGGAAGTGTCGCTCCTCAGAGAGCTCCACCACGCCAACATCGTGAAGCTGCTCAGGGTAGGGTTCACAGAGAACAGGTACGTCAACCTCGTCTTCGAGCATCTCGATTACGACCTTCATCAGTTCATTGTCAACCGAGGTTACCCCAAGGATGCCACCACTGTGAAGAGTTTCATGTTCCAGATACTCTCTGCTGTGGCTTACTGTCACTCGCGGAAGGTTCTGCACAGAGATTTGAAACCAAGCAATGTACTGATCAATCATTCCAAAAGGTTGATCAAACTAGCAGATTTCGGTTTGGCTAGAGAGTTTGCAGATGACTTTTTATATACTGAGAAGTTAGGAACTTCCTGGTATAGGGCACCTGAAATATTGTGCCACTCCAGACAATATTCAACTCAAGTTGATTTGTGGTCTGTTGGCTGCATATTTGCTGAGATGGTAATTGGACAACCTTTATTCCAAGTTATTAATTGCCGGGATGAATTGGAGGGGATTTTCAAATTGTTAGGTACCCCCACAGAGGAAACATGGCCAGGAATCACTAAATTAATGCCTAACCTTCATATCTACTGCTCCAAATTTGATCCATTGGGCCTGGAAACATTTGTTACTGATCTGGAACCAAGTGGCCTGAATCTACTATCAATGATGCTATGCTTGGACCCAAGTAAAAGGATTTCTGCGGAAGCTTCTCTAAAGCATGCTTACTTTACAGATGTGAATTGGATTTAG
>Glyma15g27600.2 sequence type=predicted peptide gene model=Glyma15g27600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVKILDVAAEGGYGRVFRCLDVHTGALVAMKQITMVRLSQGIPAQIIREVSLLRELHHANIVKLLRVGFTENRYVNLVFEHLDYDLHQFIVNRGYPKDATTVKSFMFQILSAVAYCHSRKVLHRDLKPSNVLINHSKRLIKLADFGLAREFADDFLYTEKLGTSWYRAPEILCHSRQYSTQVDLWSVGCIFAEMVIGQPLFQVINCRDELEGIFKLLGTPTEETWPGITKLMPNLHIYCSKFDPLGLETFVTDLEPSGLNLLSMMLCLDPSKRISAEASLKHAYFTDVNWI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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