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Report for Sequence Feature Glyma15g27550

Feature Type:gene_model
Chromosome:Gm15
Start:29840838
stop:29843207
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g27550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14740AT Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr3:4952185-4953306 REVERSE LENGTH=343 SoyBaseE_val: 1.00E-97ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR13793Panther PHD FINGER PROTEINS JGI ISS
PTHR13793:SF48Panther SUBFAMILY NOT NAMED JGI ISS
PF00628PFAM PHD-finger JGI ISS
UniRef100_G7ZV42UniRef Annotation by Michelle Graham. Most informative UniRef hit: PHD finger protein n=1 Tax=Medicago truncatula RepID=G7ZV42_MEDTR SoyBaseE_val: 1.00E-114ISS
UniRef100_I1MI52UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI52_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g27550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g27550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g210600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g27550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g27550
>Glyma15g27550.1   sequence type=CDS   gene model=Glyma15g27550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCTCCACCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTAAGACTCTTGCAACAACAACAGCAACAAAAAGAAGAACATCAGTATTATGACTCTTCTTCACCTTTACCCGCTAAAAAACGCAAGGAGTCTCGAACCCTATCTCCACCCTCTCCCACCACCACCAAAACCGTTTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCTACAACCCCAGAGCCCACCCTCAAATGACGTCGTCCCCGCCTTCGACCTCAATGTGGAATACACACCCAGCCCCAACAACCACGGAGACTTAGAAGAAGACCACTCCGAGGACGAGGACGGGGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGATCCAATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCACTCCCCTGTCCAAGTCCATCCCGGATGGAGACTGGTTCTGCGAACGCTGCTGTTTCCGTTTCGAGAAGAATGATGTTGGCAACATCAATTGCAATGCTTGCGTGCTGTGCCCTTCCACCGAGGGGGCGATGAAGCGGACCACCGCCGAGGAGGAAGGTGGCGCGACGTGGGCACACGTGGTGTGCGCCCTGTTCGTGCCGGAAGTGTTCTTTCTTGACCCCGAAGGGAGGGAGGGGATCGACTTCTCCAAGGTTCCAAAGAAGAGGTGGGAGGAGAGGTGCTATCTTTGCGGATCCTGCGAAGGGTGTGCTTTGGTGTGTTCTGAGCCCAAGTGCGGGTTGGGGTTTCATGTCACTTGTGCGCTGAAGGAGGAACTTTGGATTGAGTACAGGGAAGGGAAGAAGGGTGGTACCATAGTTGCCGGCTTCTGCAAAAAGCACACCCAAGTTTGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATTGTTGCTGTCGAAGATGAAAAGTAG
Predicted protein sequences of Glyma15g27550
>Glyma15g27550.1   sequence type=predicted peptide   gene model=Glyma15g27550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSTTFLNDLPPLKRLRLLQQQQQQKEEHQYYDSSSPLPAKKRKESRTLSPPSPTTTKTVYNYSLPAKKRVWALQPQSPPSNDVVPAFDLNVEYTPSPNNHGDLEEDHSEDEDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGTPLSKSIPDGDWFCERCCFRFEKNDVGNINCNACVLCPSTEGAMKRTTAEEEGGATWAHVVCALFVPEVFFLDPEGREGIDFSKVPKKRWEERCYLCGSCEGCALVCSEPKCGLGFHVTCALKEELWIEYREGKKGGTIVAGFCKKHTQVWEKQQQSGKYKIVAVEDEK*






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