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Report for Sequence Feature Glyma15g27540

Feature Type:gene_model
Chromosome:Gm15
Start:29771234
stop:29773103
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g27540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14760AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4956440-4957045 FORWARD LENGTH=168 SoyBaseE_val: 8.00E-28ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MI51UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI51_SOYBN SoyBaseE_val: 2.00E-144ISS
UniRef100_Q9LH80UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF43227.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LH80_ARATH SoyBaseE_val: 4.00E-25ISS

Expression Patterns of Glyma15g27540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g27540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g210500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g27540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g27540
>Glyma15g27540.1   sequence type=CDS   gene model=Glyma15g27540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTTTGTGGGATTTGGAAGACAAATTGAAGGTTTCAACACTAGGTGCTATTCTTCTACTTGCATGTGCAAGCTTTGCTCTTCTTCTGTGGCTTTGCATTGCTATTATACTTAGAAGGAAGGCCATTAACAATAATAAGATTGTGCACCAAGAGGGTGCTATAGATGATGAGAATGAAAATGTTACCTCAATTACTAATACTATTACCACTATTACTACTACTACTACCCCTACAGAATGGTCAGAGCCAAGTTGTGTGGGGTGGATTTCAGTGAAGAGGGTTCTAATGGGGTCAATGCTGTGGAGCAAGGCAAGCAAATTGGAGGAGAACATTGCATGGCAGAGAGAGAGGGGATCCCCTCTGCTTGGCCTACAAAGGCAGGGTCCTGATAGTGGGTGGCAAAGCCATAACTCGGAATCACCGGTGTGGCAAAGACCAATACTGAGGGGGGAGAAGTGTGAGTTGCCAAGGTTTAGTGGCCTCATTCTCTATGATGAGAAAGGAAGACTTCTTCGTGATTCAGAGGATGAAACTCACTTCATGGAAACTTCACCACAGGAAATAGGAAATGTTACAGTGAGGACTACTCTAAAAGATTTACTTTAG
Predicted protein sequences of Glyma15g27540
>Glyma15g27540.1   sequence type=predicted peptide   gene model=Glyma15g27540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLWDLEDKLKVSTLGAILLLACASFALLLWLCIAIILRRKAINNNKIVHQEGAIDDENENVTSITNTITTITTTTTPTEWSEPSCVGWISVKRVLMGSMLWSKASKLEENIAWQRERGSPLLGLQRQGPDSGWQSHNSESPVWQRPILRGEKCELPRFSGLILYDEKGRLLRDSEDETHFMETSPQEIGNVTVRTTLKDLL*






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