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Report for Sequence Feature Glyma15g27530

Feature Type:gene_model
Chromosome:Gm15
Start:29768792
stop:29770622
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14770AT Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein | chr3:4957787-4959202 REVERSE LENGTH=236 SoyBaseE_val: 3.00E-88ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0051119GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity SoyBaseN/AISS
KOG1623 KOG Multitransmembrane protein JGI ISS
PTHR10791Panther STROMAL CELL PROTEIN/NODULIN MTN3-RELATED JGI ISS
PF03083PFAM MtN3/saliva family JGI ISS
UniRef100_G7ZV40UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7ZV40_MEDTR SoyBaseE_val: 8.00E-113ISS
UniRef100_I1MI50UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI50_SOYBN SoyBaseE_val: 8.00E-157ISS

LocusGene SymbolProtein Name
SWEET41 sucrose effluxer gene 41

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g27530 not represented in the dataset

Glyma15g27530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g210400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g27530.2   sequence type=CDS   gene model=Glyma15g27530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAGTGCTAACAATTTAATCCCAAAAACAACTGAAATTTGGCACTTATCAATGTCCCCCATACCGATATTTAGGAGAATTATCAAAAATGGGTCAACAAAAATGTTCTCCGGGTTGCCTTATATTTATTCTCTCTTGAACTGCTTGATCTGCTTGTGGTATGGCACACCTCTTATATCACCTGATAATCTCTTGGTGACAACTGTTAATTCAATTGGAGCAGCCTTTCAGCTTGTGTACATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGGTTGGATTACTGCTAACAGTTTTGGGCATATTTGTGATCATACTTGTTGGGAGCTTGCAAGTTGATGACAGTACAATGCGCGGGATGTTTGTCAGATTCTTGAGTTGTGCTTCTCTCATTTCAACGTTTGCCTCTCCATTGTTTATAATTAAATTGGTGATTCAGACAAAAAGTGTTGAGTTTATGCCGTTTTATCTTTCAATTTCCACCTTCCTGATGAGCATCTCCTTCTTTCTTTATGGATTCCTCAGTGATGATGCCTTCATTTATGTACCGAATGGGATAGGAACTGTTTTAGGAATGATACAATTGGTATTATATTTTTATTACAAAGGTTCAACCAGTGAAGAGTGCAGAGAACCCTTGATAGTGTCGTATGAATGA

>Glyma15g27530.2   sequence type=predicted peptide   gene model=Glyma15g27530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISANNLIPKTTEIWHLSMSPIPIFRRIIKNGSTKMFSGLPYIYSLLNCLICLWYGTPLISPDNLLVTTVNSIGAAFQLVYILFLMYAEKARKVRMVGLLLTVLGIFVIILVGSLQVDDSTMRGMFVRFLSCASLISTFASPLFIIKLVIQTKSVEFMPFYLSISTFLMSISFFLYGFLSDDAFIYVPNGIGTVLGMIQLVLYFYYKGSTSEECREPLIVSYE*







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