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Report for Sequence Feature Glyma15g27147

Feature Type:gene_model
Chromosome:Gm15
Start:29593013
stop:29595581
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33760AT Annotation by Michelle Graham. TAIR10: tRNA synthetase class II (D, K and N) family protein | chr4:16189285-16193260 REVERSE LENGTH=664 SoyBaseE_val: 2.00E-35ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006399GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process SoyBaseN/AISS
GO:0006418GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004812GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016874GO-mf Annotation by Michelle Graham. GO Molecular Function: ligase activity SoyBaseN/AISS
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI ISS
PTHR22594:SF5Panther ASPARTYL-TRNA SYNTHETASE JGI ISS
PF00152PFAM tRNA synthetases class II (D, K and N) JGI ISS
UniRef100_G7LAG9UniRef Annotation by Michelle Graham. Best UniRef hit: Aspartyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7LAG9_MEDTR SoyBaseE_val: 3.00E-35ISS
UniRef100_G7LAG9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7LAG9_MEDTR SoyBaseE_val: 3.00E-35ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g27147 not represented in the dataset

Glyma15g27147 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g27147.1   sequence type=CDS   gene model=Glyma15g27147   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTGTGGAGATGGATTGAAACTCCTATACTGTCAAGATCCACACCAGAAGGTAACCGGGATTATTTAGTTCCATCAAGAATCCAGCTATTTAAGCAAATGCTAAAGGTAGCTGGTTTTGATAAATATTATCAAATTGCAAGATGTTTCCGTGATGAAGATTTAAGAGTTGATAGACAACCTGAGTTCACCCAACTAGATATGGAAATGGCCTTTACTCCTTAA

>Glyma15g27147.1   sequence type=predicted peptide   gene model=Glyma15g27147   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLWRWIETPILSRSTPEGNRDYLVPSRIQLFKQMLKVAGFDKYYQIARCFRDEDLRVDRQPEFTQLDMEMAFTP*







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