SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53490 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:19965146-19966811 FORWARD LENGTH=304 | SoyBase | E_val: 3.00E-170 | ISS |
| GO:0035825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal DNA recombination | SoyBase | N/A | ISS |
| GO:0051026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chiasma assembly | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR23041 | Panther | RING FINGER PROTEIN 4 | JGI | ISS | |
| PTHR23041:SF14 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_F4HRI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING/U-box domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4HRI2_ARATH | SoyBase | E_val: 1.00E-167 | ISS |
| UniRef100_I1MI45 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI45_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g27040 not represented in the dataset |
Glyma15g27040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g209600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g27040.5 sequence type=transcript gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACTCTTTTGTAGTTTACTCGGGGGAAAATAATGCCATAGACCCCACGCACACACTGTTCTGTTCATTCGTGTCGGCTCGCATTTCAAGCTTTAGCGCCAATATTCAGCTTCCGTTCATTCCACGCATTTCTCGTTCGTCCGATTCGTCGTTCTGCATTCCATTTCCTTTTAAATTTTACATTTTCAAATTCTTTTTGCAGCTTAAAATTTAAAGAATTTGAAAAGCTCACTCAGTTCTCGCTCGCGATTTTCTCACTCTCTCGTCCGACGCTCGCAATACTCGCTACGACCCTCGCTCTACTCTCTCTGTCTCACGCGCAGTGGTGCAGAGCGTCTCTCATCTCTGCGATTTAGATCTTTGTTAGACAAGCACTGGATAGTGATCTGAAATCATTGTTGAAATTTTTCTGCCTTTTATTTCAAGACATGTATGGTTAATATTGGACAGCTGAAATGAGATGCAATGCATGCTGGCGAGAAGTAGAAGGGCGAGCCATTTCCACAACTTGTGGTCACCTATTATGCACAGATGATGCCAATAAGATACTCAGCAATGATGGAGCATGTCCTATTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCCGTGGACGTCAATCCCAATGATGAATGGGTCAATATGGCCATGGCAGGGGTATCTCCACAGATATTGATGAAGAGTGCATATAGAAGTGTGATGTTCTACTTGGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAAGATTGTTGCTCAATGCCGGCAGAAATGTGAGATGATGCAAGAGAAGTTTACAGAAAAAATAGAACAGGTACATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGCAGAAGAGAAAATTGGATGAAATGTATGACCAGCTGAGGAATGAGTATGACTCGGTGAAGCGATCTGCCATACAGCCTGCAGACAACTTTTATTCCAGAAATGAGCATGATTTGTTCTCGAACCCACCTAATATAATGGATGGCAGAGAAATGGGCAGAAAAGGACCAAGAGAGGATGTCTGGCCAGCAAGGCAGAATAGCAACAACTCTGGTCACTTTGATCTGTCCGTCGGCTCACCAGCGAAACAAACAGTCATTGCAGGGGATGCTGGAAACAGAAGGGCTGGTGCTCATCCTGTTTTTGGACCTGGTGCTACTAATAACCCATCCATGACTTTGAGGAACTTAATACTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCCCCCAACTATTCACGTTGTAGGCACAAAGGAGGAGGCTAACCTTCTATAATATCAGGAAAAACGAATCTAAAGTTTGCACAAATCAGTTTGTAGTTTGCGTGATGTGCTAATGATATTTTAGACTTCCGTTTCTATTTCTTACCTCAAACTCCTATAGATGAAGAGCTGCTAACATGAACAATTTATATATCATTTTAGTTCCCTAGCTTCAATCTGTAGATAGATAATTCCCAGCGTATTATATGGTGATTGGAGAAAACTCAAAAAGTGAATACCCTTAAACTAAACTAAGTATGAGGCCGCTGCCCCATTTGGTTACTTGTAGCAAAGAATGAAAGCAGGCTTCTTCTTTCTTACCTTTCTTTTTTG >Glyma15g27040.6 sequence type=transcript gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACTCTTTTGTAGTTTACTCGGGGGAAAATAATGCCATAGACCCCACGCACACACTGTTCTGTTCATTCGTGTCGGCTCGCATTTCAAGCTTTAGCGCCAATATTCAGCTTCCGTTCATTCCACGCATTTCTCGTTCGTCCGATTCGTCGTTCTGCATTCCATTTCCTTTTAAATTTTACATTTTCAAATTCTTTTTGCAGCTTAAAATTTAAAGAATTTGAAAAGCTCACTCAGTTCTCGCTCGCGATTTTCTCACTCTCTCGTCCGACGCTCGCAATACTCGCTACGACCCTCGCTCTACTCTCTCTGTCTCACGCGCAGTGGTGCAGAGCGTCTCTCATCTCTGCGATTTAGTTATTTCAAGACATGTATGGTTAATATTGGACAGCTGAAATGAGATGCAATGCATGCTGGCGAGAAGTAGAAGGGCGAGCCATTTCCACAACTTGTGGTCACCTATTATGCACAGATGATGCCAATAAGATACTCAGCAATGATGGAGCATGTCCTATTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCCGTGGACGTCAATCCCAATGATGAATGGGTCAATATGGCCATGGCAGGGGTATCTCCACAGATATTGATGAAGAGTGCATATAGAAGTGTGATGTTCTACTTGGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAAGATTGTTGCTCAATGCCGGCAGAAATGTGAGATGATGCAAGAGAAGTTTACAGAAAAAATAGAACAGGTACATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGCAGAAGAGAAAATTGGATGAAATGTATGACCAGCTGAGGAATGAGTATGACTCGGTGAAGCGATCTGCCATACAGCCTGCAGACAACTTTTATTCCAGAAATGAGCATGATTTGTTCTCGAACCCACCTAATATAATGGATGGCAGAGAAATGGGCAGAAAAGGACCAAGAGAGGATGTCTGGCCAGCAAGGCAGAATAGCAACAACTCTGGTCACTTTGATCTGTCCGTCGGCTCACCAGCGAAACAAACAGTCATTGCAGGGGATGCTGGAAACAGAAGGGCTGGTGCTCATCCTGTTTTTGGACCTGGTGCTACTAATAACCCATCCATGACTTTGAGGAACTTAATACTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCCCCCAACTATTCACGTTGTAGGCACAAAGGAGGAGGCTAACCTTCTATAATATCAGGAAAAACGAATCTAAAGTTTGCACAAATCAGTTTGTAGTTTGCGTGATGTGCTAATGATATTTTAGACTTCCGTTTCTATTTCTTACCTCAAACTCCTATAGATGAAGAGCTGCTAACATGAACAATTTATATATCATTTTAGTTCCCTAGCTTCAATCTGTAGATAGATAATTCCCAGCGTATTATATGGTGATTGGAGAAAACTCAAAAAGTGAATACCCTTAAACTAAACTAAGTATGAGGCCGCTGCCCCATTTGGTTACTTGTAGCAAAGAATGAAAGCAGGCTTCTTCTTTCTTACCTTTCTTTTTTG
>Glyma15g27040.2 sequence type=CDS gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATGCAATGCATGCTGGCGAGAAGTAGAAGGGCGAGCCATTTCCACAACTTGTGGTCACCTATTATTGATGAAGAGTGCATATAGAAGTGTGATGTTCTACTTGGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAAGATTGTTGCTCAATGCCGGCAGAAATGTGAGATGATGCAAGAGAAGTTTACAGAAAAAATAGAACAGGTACATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGCAGAAGAGAAAATTGGATGAAATGTATGACCAGCTGAGGAATGAGTATGACTCGGTGAAGCGATCTGCCATACAGCCTGCAGACAACTTTTATTCCAGAAATGAGCATGATTTGTTCTCGAACCCACCTAATATAATGGATGGCAGAGAAATGGGCAGAAAAGGACCAAGAGAGGATGTCTGGCCAGCAAGGCAGAATAGCAACAACTCTGGTCACTTTGATCTGTCCGTCGGCTCACCAGCGAAACAAACAGTCATTGCAGGGGATGCTGGAAACAGAAGGGCTGGTGCTCATCCTGTTTTTGGACCTGGTGCTACTAATAACCCATCCATGACTTTGAGGAACTTAATACTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCCCCCAACTATTCACGTTGTAG >Glyma15g27040.5 sequence type=CDS gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATGCAATGCATGCTGGCGAGAAGTAGAAGGGCGAGCCATTTCCACAACTTGTGGTCACCTATTATGCACAGATGATGCCAATAAGATACTCAGCAATGATGGAGCATGTCCTATTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCCGTGGACGTCAATCCCAATGATGAATGGGTCAATATGGCCATGGCAGGGGTATCTCCACAGATATTGATGAAGAGTGCATATAGAAGTGTGATGTTCTACTTGGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAAGATTGTTGCTCAATGCCGGCAGAAATGTGAGATGATGCAAGAGAAGTTTACAGAAAAAATAGAACAGGTACATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGCAGAAGAGAAAATTGGATGAAATGTATGACCAGCTGAGGAATGAGTATGACTCGGTGAAGCGATCTGCCATACAGCCTGCAGACAACTTTTATTCCAGAAATGAGCATGATTTGTTCTCGAACCCACCTAATATAATGGATGGCAGAGAAATGGGCAGAAAAGGACCAAGAGAGGATGTCTGGCCAGCAAGGCAGAATAGCAACAACTCTGGTCACTTTGATCTGTCCGTCGGCTCACCAGCGAAACAAACAGTCATTGCAGGGGATGCTGGAAACAGAAGGGCTGGTGCTCATCCTGTTTTTGGACCTGGTGCTACTAATAACCCATCCATGACTTTGAGGAACTTAATACTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCCCCCAACTATTCACGTTGTAG >Glyma15g27040.6 sequence type=CDS gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATGCAATGCATGCTGGCGAGAAGTAGAAGGGCGAGCCATTTCCACAACTTGTGGTCACCTATTATGCACAGATGATGCCAATAAGATACTCAGCAATGATGGAGCATGTCCTATTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCCGTGGACGTCAATCCCAATGATGAATGGGTCAATATGGCCATGGCAGGGGTATCTCCACAGATATTGATGAAGAGTGCATATAGAAGTGTGATGTTCTACTTGGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAAGATTGTTGCTCAATGCCGGCAGAAATGTGAGATGATGCAAGAGAAGTTTACAGAAAAAATAGAACAGGTACATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGCAGAAGAGAAAATTGGATGAAATGTATGACCAGCTGAGGAATGAGTATGACTCGGTGAAGCGATCTGCCATACAGCCTGCAGACAACTTTTATTCCAGAAATGAGCATGATTTGTTCTCGAACCCACCTAATATAATGGATGGCAGAGAAATGGGCAGAAAAGGACCAAGAGAGGATGTCTGGCCAGCAAGGCAGAATAGCAACAACTCTGGTCACTTTGATCTGTCCGTCGGCTCACCAGCGAAACAAACAGTCATTGCAGGGGATGCTGGAAACAGAAGGGCTGGTGCTCATCCTGTTTTTGGACCTGGTGCTACTAATAACCCATCCATGACTTTGAGGAACTTAATACTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCCCCCAACTATTCACGTTGTAG
>Glyma15g27040.2 sequence type=predicted peptide gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRCNACWREVEGRAISTTCGHLLLMKSAYRSVMFYLGQKELEMQFKMNKIVAQCRQKCEMMQEKFTEKIEQVHTAYQKMAKKCQMMQQEIESLTKDNQELQEKFAEKSRQKRKLDEMYDQLRNEYDSVKRSAIQPADNFYSRNEHDLFSNPPNIMDGREMGRKGPREDVWPARQNSNNSGHFDLSVGSPAKQTVIAGDAGNRRAGAHPVFGPGATNNPSMTLRNLILSPIKRPQLSRNRPQLFTL* >Glyma15g27040.5 sequence type=predicted peptide gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRCNACWREVEGRAISTTCGHLLCTDDANKILSNDGACPICDQVLSKSLMKPVDVNPNDEWVNMAMAGVSPQILMKSAYRSVMFYLGQKELEMQFKMNKIVAQCRQKCEMMQEKFTEKIEQVHTAYQKMAKKCQMMQQEIESLTKDNQELQEKFAEKSRQKRKLDEMYDQLRNEYDSVKRSAIQPADNFYSRNEHDLFSNPPNIMDGREMGRKGPREDVWPARQNSNNSGHFDLSVGSPAKQTVIAGDAGNRRAGAHPVFGPGATNNPSMTLRNLILSPIKRPQLSRNRPQLFTL* >Glyma15g27040.6 sequence type=predicted peptide gene model=Glyma15g27040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRCNACWREVEGRAISTTCGHLLCTDDANKILSNDGACPICDQVLSKSLMKPVDVNPNDEWVNMAMAGVSPQILMKSAYRSVMFYLGQKELEMQFKMNKIVAQCRQKCEMMQEKFTEKIEQVHTAYQKMAKKCQMMQQEIESLTKDNQELQEKFAEKSRQKRKLDEMYDQLRNEYDSVKRSAIQPADNFYSRNEHDLFSNPPNIMDGREMGRKGPREDVWPARQNSNNSGHFDLSVGSPAKQTVIAGDAGNRRAGAHPVFGPGATNNPSMTLRNLILSPIKRPQLSRNRPQLFTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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