SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28520 | AT | Annotation by Michelle Graham. TAIR10: vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486 | SoyBase | E_val: 9.00E-104 | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0048578 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| UniRef100_B9DG33 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT1G28520 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=B9DG33_ARATH | SoyBase | E_val: 4.00E-101 | ISS |
| UniRef100_I1KEV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KEV7_SOYBN | SoyBase | E_val: 4.00E-174 | ISS |
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Glyma15g26343 not represented in the dataset |
Glyma15g26343 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g26343.1 sequence type=CDS gene model=Glyma15g26343 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAACAACTCAGAATCAACTCAATTTAGTTTAGAAGGTTTTGATTGTAGCCAATTCTTTGAAGCTGATGACAATGTGCAGCATGGAGAGAATATTATACCTAACATTCTTCCAAATATCTGCCCTCCACCTTCTGCTTTCTTAGCCCCAGAATGTGCCCTATGGGACTATTTCAGACTTGCTCAAGGGGTTGAATGGTGCCAGAACTACTGTAGTAGTTGTCATGAGCTGTTGGCAAATAACGAGGGTCTTCCTGGCATGACCCCAATTTTGCGACCTTGGGGAATTGGTGTAAAAGATGGTCCTTTGTTTACTGTTGTTCTTGCTAAGACGCGGGGAAAGGAAGTGGGCATCCCTAGTTGTGAAGAGTTCTTTGATCTTTCTTTTCTTGAGGGTGAAACTGTTAGGGAGTGGCTCTTCTTTAACAAGCCTAGAAGGGCATTTGAAAGTTTAAATAGAAAACAGAGATCACTTCCGGATTACAGTGGGCATGGTTGGCATGAATCAATGAAGCAGGTAATGAAGGAACATGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAACCTCTTAGTTATCTCGAGTGGCATTTGTATGAGTATGAGATCAACAACCAGGATTGTTGTGCATTATACATACTAGAATTAAAGCTGGTGGACAAAAAGAAAAGTCCTAAAGGAAAAGTGACCAAGGAATCTCTTACTGATTTGCAGAACAAGATGGGACAGCTTACTGCTACTGTTCCATCTACTGATGATGACAACCAGTCAAGGGAAAAACAAATGCCAAATATGAGAATGACGAATCTCCCAACAAATTATTAG
>Glyma15g26343.1 sequence type=predicted peptide gene model=Glyma15g26343 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNNSESTQFSLEGFDCSQFFEADDNVQHGENIIPNILPNICPPPSAFLAPECALWDYFRLAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPWGIGVKDGPLFTVVLAKTRGKEVGIPSCEEFFDLSFLEGETVREWLFFNKPRRAFESLNRKQRSLPDYSGHGWHESMKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDCCALYILELKLVDKKKSPKGKVTKESLTDLQNKMGQLTATVPSTDDDNQSREKQMPNMRMTNLPTNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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