Report for Sequence Feature Glyma15g25400
Feature Type: gene_model
Chromosome: Gm15
Start: 26712772
stop: 26717330
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g25400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G18490 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) | chr1:6367116-6368640 FORWARD LENGTH=282
SoyBase E_val: 6.00E-113 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0047800 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity
SoyBase N/A ISS
KOG4281
KOG
Uncharacterized conserved protein
JGI ISS
PTHR22966 Panther
UNCHARACTERIZED
JGI ISS
PF07847 PFAM
Protein of unknown function (DUF1637)
JGI ISS
UniRef100_E6NU47 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: JHL10I11.3 protein n=1 Tax=Jatropha curcas RepID=E6NU47_9ROSI
SoyBase E_val: 4.00E-132 ISS
UniRef100_I1MI26 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MI26_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g25400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g25400
Paralog Evidence Comments
Glyma06g23070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g25400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g207700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g25400
Coding sequences of Glyma15g25400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g25400.1 sequence type=CDS gene model=Glyma15g25400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGCACCAAAGCTCCAAGGTTCAGGCTTTGTATGAACATTGCAAAACCATCTTATCGCCCTCTGGATCACCCCCTCCTTCGTCCCAAGCTTTGCAGAAGCTTTCTTCGATTCTGGACACTATTCAACCTGCTGATGTTGGCCTTAAAGAAGAAACTGCAGACGATGATCGAGGGCATGGATTTTTTGGCACTAATGCACTTAGTAGATTAGCTCGATGGGCTCAACCAATAACATATGTGGACATTCATGAATGTGATAATTTTACGATGTGTATATTTTGTTTCCCTACTTCTTCAGTTATTCCTCTCCATGACCATCCGGGGATGACTGTATTTAGCAAACTTCTCTATGGCTCTTTACATGTGAAAGCTTATGACTGGGTTGAGCCTCCCTGCATCATAGAAAGCAAAGAACCAGGATATGCTCAAGTAAGACTAGCAAAGTTAGAAGTTGATAAGGTCTTGAATGCACCGTGTGATACATCAGTTTTATATCCCAAACACGGTGGAAATCTGCACTGTTTCACAGCAGTGACACCTTGTGCCATGCTAGACATTCTCACACCTCCTTACAGAGAAGAGGAAGGAAGGAGGTGTACTTACTATCATGATTATCCTTATTCAGCATTCTCAGTTGCAAATGCACCTATATGTGACGGGGAAGAGGAGGAATATGCATGGCTCACAGAGTTAGAATCACCTAGTGATCTTTATATGCGCCAGGGGGTATATGCTGGTCCAGCTATTCAGCTTTAG
Predicted protein sequences of Glyma15g25400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g25400.1 sequence type=predicted peptide gene model=Glyma15g25400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRHQSSKVQALYEHCKTILSPSGSPPPSSQALQKLSSILDTIQPADVGLKEETADDDRGHGFFGTNALSRLARWAQPITYVDIHECDNFTMCIFCFPTSSVIPLHDHPGMTVFSKLLYGSLHVKAYDWVEPPCIIESKEPGYAQVRLAKLEVDKVLNAPCDTSVLYPKHGGNLHCFTAVTPCAMLDILTPPYREEEGRRCTYYHDYPYSAFSVANAPICDGEEEEYAWLTELESPSDLYMRQGVYAGPAIQL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
