Glyma15g25010 - SoyBase

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Report for Sequence Feature Glyma15g25010

Feature Type:	gene_model
Chromosome:	Gm15
Start:	26155980
stop:	26159844
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g25010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31020	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr4:15108832-15110079 REVERSE LENGTH=294	SoyBase	E_val: 2.00E-169	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1552	KOG	Predicted alpha/beta hydrolase	JGI		ISS
PTHR12277	Panther	UNCHARACTERIZED	JGI		ISS
PTHR12277:SF8	Panther	UNCHARACTERIZED	JGI		ISS
PF02230	PFAM	Phospholipase/Carboxylesterase	JGI		ISS
UniRef100_B9SBZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein bem46, putative n=1 Tax=Ricinus communis RepID=B9SBZ4_RICCO	SoyBase	E_val: 2.00E-168	ISS
UniRef100_I1MI16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI16_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g25010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g25010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g206300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g25010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g25010

Limit To All Plant Sequences

>Glyma15g25010.1   sequence type=CDS   gene model=Glyma15g25010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAATGTTACGGGGAGCGTGGCGGCGAGATTGGCGTTTTTCCCGCCGGAGCCGGCGACGTACAGGGTTTCCCGGGAGCAGGACGGGAGGGTGGTGGTGTCGGGTGCGGGTTTGAGCGAGGACAGGGACCTGGTGGCTCACGTTCTGGAGACGAAGGGCGGGAACAGGATCGTTGCCACGTTCTGGAAGCACACTTTTGCGAGGTTCACGTTGCTCTACTCGCATGGCAACGCCGCTGACTTGGGACAGATGCATGACCTCTTCCTTGAACTCAGGGCTCACCTCCGCGTCAATATCATGAGCTATGACTATGCAGGATATGGAGCATCTACAGGTAAGCCATCTGAGTTCAACACATATTATGACATAGAGGCTGTGTATGATTGTTTGAAGAGTGAATATGGCATTAAGCAAGAAGATTTGATTTTGTATGGTCAATCAGTTGGTAGTGGGCCCACAATACATTTGGCTACTAAGTTACCTAATTTGAGAGGTGTTGTTCTTCACAGTGGCATCCTTTCAGGGATAAGGGTCTTATACCCTGTTAAGGTGACATTTTGGTTTGACATATTCAAAAATATAGACAAAATAAGGCACGTTGACTGTCCAGTCTTGGTTATACATGGAACTAATGATGAAATCGTTGACTGGTCCCATGGAAAAAGATTGTGGGAACTTTCCAAGGAAAAATATGACCCTTTGTGGGTTAAGGGTGGGGGTCATTGCAACCTTGAGGCTTTCCCAGAGTACATCAAGCACTTGCGCAAGTTCCTAAATGCCATGGAGAAACTCTCAATCACAGGAGAGACAAACAAACAACCCACTCATGATCCTAGTGATACTGAAGAAGAACACAAACATAACAAATGTTTAAGATTTGGTTTAAGATAG

Predicted protein sequences of Glyma15g25010

Limit To All Plant Sequences

>Glyma15g25010.1   sequence type=predicted peptide   gene model=Glyma15g25010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNVTGSVAARLAFFPPEPATYRVSREQDGRVVVSGAGLSEDRDLVAHVLETKGGNRIVATFWKHTFARFTLLYSHGNAADLGQMHDLFLELRAHLRVNIMSYDYAGYGASTGKPSEFNTYYDIEAVYDCLKSEYGIKQEDLILYGQSVGSGPTIHLATKLPNLRGVVLHSGILSGIRVLYPVKVTFWFDIFKNIDKIRHVDCPVLVIHGTNDEIVDWSHGKRLWELSKEKYDPLWVKGGGHCNLEAFPEYIKHLRKFLNAMEKLSITGETNKQPTHDPSDTEEEHKHNKCLRFGLR*

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