Glyma15g24680 - SoyBase

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Report for Sequence Feature Glyma15g24680

Feature Type:	gene_model
Chromosome:	Gm15
Start:	25698500
stop:	25707524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g24680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35170	AT	Annotation by Michelle Graham. TAIR10: adenylate kinase family protein \| chr5:13419278-13423482 FORWARD LENGTH=588	SoyBase	E_val: 0	ISS
GO:0006139	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0009061	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaerobic respiration	SoyBase	N/A	ISS
GO:0009117	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0046939	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide phosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenylate kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016776	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, phosphate group as acceptor	SoyBase	N/A	ISS
GO:0019205	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleobase-containing compound kinase activity	SoyBase	N/A	ISS
KOG3078	KOG	Adenylate kinase	JGI		ISS
PTHR23359	Panther	ADENYLATE KINASE	JGI		ISS
PTHR23359:SF47	Panther		JGI		ISS
PF00406	PFAM	Adenylate kinase	JGI		ISS
PF05191	PFAM	Adenylate kinase, active site lid	JGI		ISS
PF09353	PFAM	Domain of unknown function (DUF1995)	JGI		ISS
UniRef100_I1MI09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylate kinase 15 n=1 Tax=Glycine max RepID=I1MI09_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MI09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Adenylate kinase 15 n=1 Tax=Glycine max RepID=I1MI09_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g24680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g24680

Paralog	Evidence	Comments
Glyma09g13220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g24680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g203100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g24680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g24680

Limit To All Plant Sequences

>Glyma15g24680.2   sequence type=transcript   gene model=Glyma15g24680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTTTTCAGCTAAAGTAAAACTAAAAGGAGCAGTGGCATTTGTGGTGTGTGAGTGAGTGTGATGAGTGTTCGTGAACCACTAAACTAATTCGACTGTGTGTGACACATTATCTCAATTCTCAAAGCAATGCAACAAAAAATGTTGAACTCCACACCCACCTGCTTCCACCGCACCACCACTCTCACTCCCTCTCCTTCTCTTCTATCCACTCCTCTTCCTTCTTGTTCTTCTTCTTCCACCCATCATCATTCATATCTACACCCCCGCCACTCCTCCTTCCACACTCAACCTCTTCGCTTAAGCAACCTCCGCTACCACACCCATTTGCCATCAACCCCCAAGACACTCAAAGTGAACTGTTCCACCAGCGAGCCTCTGAAGGTCATGATATCAGGTGCACCTGCATCGGGCAAAGGCACGCAATGTGAATTGATTGTCCAAAAGTTTGGATTGGTGCATATATCAACAGGGGATTTGCTAAGAGCAGAGGTAGCGGCTGGGACTGAAATTGGAAATAAAGCAAAGGAGTTCATGAACACGGGTCAATTGGTTCCTGATGAAATTGTGACAGCGATGGTGGCAGCACGATTGGCTCGTGAAGATGTTAGGCATAAAGGGTGGCTTCTTGATGGGTACCCTCGGAGTTTTGGCCAAGCCCAGAGTCTGGAGAAAATGCAGATACGGCCTGATGTGTATATCGTATTAGATGTTCCTGATGAAATTCTGATCGACAGATGTGTTGGTAGAAGGCTAGACCCAGTGACAGGGAAGATATATCATCTAAAGTTTTTTCCACCGGATACAGAAGAAATTAAAGCAAGGCTGATAACTCGGCCTGATGACACTGAGGAGAAGGTCAAATCTCGCCTAAACATATACAAGCAAAATGCAGAAGCAGCATCTTCCTCTTACTCCAGCATAACACATAAGATTGATGGAAGTCATTCAAAAGAAGCAGTTTTCAAAGAAATTGAATCTTTATTATCTCAATTGCAACAGGATAAAGTGAAAATAATTGAATCAGGAGAAAAACCAATTCCTGATACAAAGAAAGGACGGACATCTTTGAGCCAGGATAAGTGGAGAGGGATTCCTACTAGACTAAATAACATTCCACATTCTCGAGAAATCAGGAAATATTTCTATGATGATGTGCTACAAGCTACACAGAGGGCTATTAGTGATGGAAAAACTAGGGTGAAGGTTGACATCAACATTCCTGAACTGAACCCGGAAATGGATGTTTATCGAATAGGTACCTTGATGGAACTTGTTCGAGCTCTTGCCCTTTCTTTTGCTGATGATGGAAAACGGGTTAAGGTTTGTGTACAAGGGTCAATGGGAGAAGGTGCTCTCGCTGGAATGCCATTGCAGCTTGCTGGAACTCGTAAGATTTTAGAGTTCATGGATTGGGGTGATTATGGAGCAAAAGGAACCTTCATCAATATTGGTTCTATAGGAGCTGCAGAGGTTGAGGAGCAAGATGACATGTTTATCTTGGTGGCTCCTCAAAATGCTGTTGGGAATTGTATTATTGATGATCTAAGAGCCATGACCAATGCTGCTGAACACAGACCAGTTATACTAATCAATGCTAGGCTTAAGGATTTGCCTGGTTCTAGTGGTATTATGCAAGTGAGTACTTAATCAGAAAGTTGAAGATAACAATTTTTTCTTGAAAAAGTATGGTTATAACTTTGCCTTCTTATCCACTAGACAATTGGGAGGGACCAGAGACTCAAGTATGCAGCATCATTTGAAAGTTGCTACTTCTTTAGGCTTCTGTATTATGCAGGAACCCAGTATCCCATAATGGGAGCTATCAGGTTAGACAGTAACATATTTGCATCATTACGTTTTTTTATTAATCTTATGTGCCATTTCCTGACTTAGAGAAGATAGCATTGAATTGGCAGGCTTTTCATGGCTTGCTTCAATGAATGTAGCCTCTCAAAACTTCTAATGAGATTATATGATCAGAAACAAAGTTTTTGGGAACTACAGAGAAAAAAATTAATGACCATGCTTCCATATGTTCATAAAAACAAGTCAAATCAAATTGATTCATGTTTCTTCAGGCTGGTTCTATTAGAAAACATTAACAATTAGCATATTCTCTTCCTTCTGTGCAAGGGGTGTCTGCGTGATGGAATTAACAAATGTAGAAACTAAAGCATCATTACCATGATTAGAGTGTTTTCAGAAGCTCCTTCCTACTTGAAATGACCAAACTAGATATTTAATTGTTTAATATGCTCAAAATACAAAGACATTCTCTATCTTCTACCAGCAGTAGTTATGAAGTATGGTATTGTAAATTAATTTCTTGTGATTTAGGATGACTTATCCATACCAATATGATCTGTACAAGAGGGTAGATGAATCGCCTGGAAAGGAGAAATATGTAATTTTGTCTACCTTTCCAGAGAGGCCTACTACAGATGAAATTAATGATGCTTTTCAAGGAAAACCAAGCAAGGATCCTAGGAAAACCTCAGGGATTTGGGGCTTCTTGAGTGGCATACTCTGAGCAGAATGAAAAGCAATGAGGAAGCGTCTAAGTCTTTGATTTTCTTTATTATTATTGAAGAACGATGGAAATCAGCTGTGTGATTGTAGATAGTATCAAAGTCAGAGCTTGTAGTTCAACTTGCTGGTGGTGGAGCAGCTTGTTTAAAATTGAGTGTAGATGACTGGGAAATGATGATTTGACAAAAAAGACTTATCAAATAATAAATGATCCAAGATTTAAGGGACAGGAGGAACAACTTTGTTTATAAACAACTACATCAATATACATATATATATTATGGGGCTCAAAGGATAGCACTTGTATTGACTTTTTGTACTTATGAATCAATTATTTTTCTCGTGGTTACGTGAAGGGTGAGGTATATGTACGAGTATTATAACTTCTGGATAGTTAAATACTCAATTTAATGCAAGTTGCTTTCCAACTAGTATTTCTTTATAGCTTGGGTGACTATTTTGGCTTGGTTGTGATTTCTTGGTTTATGAATTCCCTCTATTAGAGAAATAACATTTCATCACATCTTGTATGTAAAAATGTTTCGTTTCTTTTTCAAGGCGTGTAACCTGTTCTAATTTTTTTTT

Coding sequences of Glyma15g24680

Limit To All Plant Sequences

>Glyma15g24680.1   sequence type=CDS   gene model=Glyma15g24680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAAAAAATGTTGAACTCCACACCCACCTGCTTCCACCGCACCACCACTCTCACTCCCTCTCCTTCTCTTCTATCCACTCCTCTTCCTTCTTGTTCTTCTTCTTCCACCCATCATCATTCATATCTACACCCCCGCCACTCCTCCTTCCACACTCAACCTCTTCGCTTAAGCAACCTCCGCTACCACACCCATTTGCCATCAACCCCCAAGACACTCAAAGTGAACTGTTCCACCAGCGAGCCTCTGAAGGTCATGATATCAGGTGCACCTGCATCGGGCAAAGGCACGCAATGTGAATTGATTGTCCAAAAGTTTGGATTGGTGCATATATCAACAGGGGATTTGCTAAGAGCAGAGGTAGCGGCTGGGACTGAAATTGGAAATAAAGCAAAGGAGTTCATGAACACGGGTCAATTGGTTCCTGATGAAATTGTGACAGCGATGGTGGCAGCACGATTGGCTCGTGAAGATGTTAGGCATAAAGGGTGGCTTCTTGATGGGTACCCTCGGAGTTTTGGCCAAGCCCAGAGTCTGGAGAAAATGCAGATACGGCCTGATGTGTATATCGTATTAGATGTTCCTGATGAAATTCTGATCGACAGATGTGTTGGTAGAAGGCTAGACCCAGTGACAGGGAAGATATATCATCTAAAGTTTTTTCCACCGGATACAGAAGAAATTAAAGCAAGGCTGATAACTCGGCCTGATGACACTGAGGAGAAGGTCAAATCTCGCCTAAACATATACAAGCAAAATGCAGAAGCAGCATCTTCCTCTTACTCCAGCATAACACATAAGATTGATGGAAGTCATTCAAAAGAAGCAGTTTTCAAAGAAATTGAATCTTTATTATCTCAATTGCAACAGGATAAAGTGAAAATAATTGAATCAGGAGAAAAACCAATTCCTGATACAAAGAAAGGACGGACATCTTTGAGCCAGGATAAGTGGAGAGGGATTCCTACTAGACTAAATAACATTCCACATTCTCGAGAAATCAGGAAATATTTCTATGATGATGTGCTACAAGCTACACAGAGGGCTATTAGTGATGGAAAAACTAGGGTGAAGGTTGACATCAACATTCCTGAACTGAACCCGGAAATGGATGTTTATCGAATAGGTACCTTGATGGAACTTGTTCGAGCTCTTGCCCTTTCTTTTGCTGATGATGGAAAACGGGTTAAGGTTTGTGTACAAGGGTCAATGGGAGAAGGTGCTCTCGCTGGAATGCCATTGCAGCTTGCTGGAACTCGTAAGATTTTAGAGTTCATGGATTGGGGTGATTATGGAGCAAAAGGAACCTTCATCAATATTGGTTCTATAGGAGCTGCAGAGGTTGAGGAGCAAGATGACATGTTTATCTTGGTGGCTCCTCAAAATGCTGTTGGGAATTGTATTATTGATGATCTAAGAGCCATGACCAATGCTGCTGAACACAGACCAGTTATACTAATCAATGCTAGGCTTAAGGATTTGCCTGGTTCTAGTGGTATTATGCAAACAATTGGGAGGGACCAGAGACTCAAGTATGCAGCATCATTTGAAAGTTGCTACTTCTTTAGGCTTCTGTATTATGCAGGAACCCAGTATCCCATAATGGGAGCTATCAGGATGACTTATCCATACCAATATGATCTGTACAAGAGGGTAGATGAATCGCCTGGAAAGGAGAAATATGTAATTTTGTCTACCTTTCCAGAGAGGCCTACTACAGATGAAATTAATGATGCTTTTCAAGGAAAACCAAGCAAGGATCCTAGGAAAACCTCAGGGATTTGGGGCTTCTTGAGTGGCATACTCTGA

>Glyma15g24680.2   sequence type=CDS   gene model=Glyma15g24680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAAAAAATGTTGAACTCCACACCCACCTGCTTCCACCGCACCACCACTCTCACTCCCTCTCCTTCTCTTCTATCCACTCCTCTTCCTTCTTGTTCTTCTTCTTCCACCCATCATCATTCATATCTACACCCCCGCCACTCCTCCTTCCACACTCAACCTCTTCGCTTAAGCAACCTCCGCTACCACACCCATTTGCCATCAACCCCCAAGACACTCAAAGTGAACTGTTCCACCAGCGAGCCTCTGAAGGTCATGATATCAGGTGCACCTGCATCGGGCAAAGGCACGCAATGTGAATTGATTGTCCAAAAGTTTGGATTGGTGCATATATCAACAGGGGATTTGCTAAGAGCAGAGGTAGCGGCTGGGACTGAAATTGGAAATAAAGCAAAGGAGTTCATGAACACGGGTCAATTGGTTCCTGATGAAATTGTGACAGCGATGGTGGCAGCACGATTGGCTCGTGAAGATGTTAGGCATAAAGGGTGGCTTCTTGATGGGTACCCTCGGAGTTTTGGCCAAGCCCAGAGTCTGGAGAAAATGCAGATACGGCCTGATGTGTATATCGTATTAGATGTTCCTGATGAAATTCTGATCGACAGATGTGTTGGTAGAAGGCTAGACCCAGTGACAGGGAAGATATATCATCTAAAGTTTTTTCCACCGGATACAGAAGAAATTAAAGCAAGGCTGATAACTCGGCCTGATGACACTGAGGAGAAGGTCAAATCTCGCCTAAACATATACAAGCAAAATGCAGAAGCAGCATCTTCCTCTTACTCCAGCATAACACATAAGATTGATGGAAGTCATTCAAAAGAAGCAGTTTTCAAAGAAATTGAATCTTTATTATCTCAATTGCAACAGGATAAAGTGAAAATAATTGAATCAGGAGAAAAACCAATTCCTGATACAAAGAAAGGACGGACATCTTTGAGCCAGGATAAGTGGAGAGGGATTCCTACTAGACTAAATAACATTCCACATTCTCGAGAAATCAGGAAATATTTCTATGATGATGTGCTACAAGCTACACAGAGGGCTATTAGTGATGGAAAAACTAGGGTGAAGGTTGACATCAACATTCCTGAACTGAACCCGGAAATGGATGTTTATCGAATAGGTACCTTGATGGAACTTGTTCGAGCTCTTGCCCTTTCTTTTGCTGATGATGGAAAACGGGTTAAGGTTTGTGTACAAGGGTCAATGGGAGAAGGTGCTCTCGCTGGAATGCCATTGCAGCTTGCTGGAACTCGTAAGATTTTAGAGTTCATGGATTGGGGTGATTATGGAGCAAAAGGAACCTTCATCAATATTGGTTCTATAGGAGCTGCAGAGGTTGAGGAGCAAGATGACATGTTTATCTTGGTGGCTCCTCAAAATGCTGTTGGGAATTGTATTATTGATGATCTAAGAGCCATGACCAATGCTGCTGAACACAGACCAGTTATACTAATCAATGCTAGGCTTAAGGATTTGCCTGGTTCTAGTGGTATTATGCAAGTGAGTACTTAA

Predicted protein sequences of Glyma15g24680

Limit To All Plant Sequences

>Glyma15g24680.1   sequence type=predicted peptide   gene model=Glyma15g24680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQKMLNSTPTCFHRTTTLTPSPSLLSTPLPSCSSSSTHHHSYLHPRHSSFHTQPLRLSNLRYHTHLPSTPKTLKVNCSTSEPLKVMISGAPASGKGTQCELIVQKFGLVHISTGDLLRAEVAAGTEIGNKAKEFMNTGQLVPDEIVTAMVAARLAREDVRHKGWLLDGYPRSFGQAQSLEKMQIRPDVYIVLDVPDEILIDRCVGRRLDPVTGKIYHLKFFPPDTEEIKARLITRPDDTEEKVKSRLNIYKQNAEAASSSYSSITHKIDGSHSKEAVFKEIESLLSQLQQDKVKIIESGEKPIPDTKKGRTSLSQDKWRGIPTRLNNIPHSREIRKYFYDDVLQATQRAISDGKTRVKVDINIPELNPEMDVYRIGTLMELVRALALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFINIGSIGAAEVEEQDDMFILVAPQNAVGNCIIDDLRAMTNAAEHRPVILINARLKDLPGSSGIMQTIGRDQRLKYAASFESCYFFRLLYYAGTQYPIMGAIRMTYPYQYDLYKRVDESPGKEKYVILSTFPERPTTDEINDAFQGKPSKDPRKTSGIWGFLSGIL*

>Glyma15g24680.2   sequence type=predicted peptide   gene model=Glyma15g24680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQKMLNSTPTCFHRTTTLTPSPSLLSTPLPSCSSSSTHHHSYLHPRHSSFHTQPLRLSNLRYHTHLPSTPKTLKVNCSTSEPLKVMISGAPASGKGTQCELIVQKFGLVHISTGDLLRAEVAAGTEIGNKAKEFMNTGQLVPDEIVTAMVAARLAREDVRHKGWLLDGYPRSFGQAQSLEKMQIRPDVYIVLDVPDEILIDRCVGRRLDPVTGKIYHLKFFPPDTEEIKARLITRPDDTEEKVKSRLNIYKQNAEAASSSYSSITHKIDGSHSKEAVFKEIESLLSQLQQDKVKIIESGEKPIPDTKKGRTSLSQDKWRGIPTRLNNIPHSREIRKYFYDDVLQATQRAISDGKTRVKVDINIPELNPEMDVYRIGTLMELVRALALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFINIGSIGAAEVEEQDDMFILVAPQNAVGNCIIDDLRAMTNAAEHRPVILINARLKDLPGSSGIMQVST*

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