Report for Sequence Feature Glyma15g24670
Feature Type: gene_model
Chromosome: Gm15
Start: 25687431
stop: 25690388
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g24670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G35160 AT
Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658
SoyBase E_val: 0 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
KOG1278
KOG
Endosomal membrane proteins, EMP70
JGI ISS
PTHR10766 Panther
TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER
JGI ISS
PTHR10766:SF1 Panther
gb def: hypothetical orf, yer113cp [saccharomyces cerevisiae]
JGI ISS
PF02990 PFAM
Endomembrane protein 70
JGI ISS
UniRef100_B9SC23 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9SC23_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MI08 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI08_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g24670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g24670
Paralog Evidence Comments
Glyma09g13210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g24670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g203000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g24670
Coding sequences of Glyma15g24670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g24670.1 sequence type=CDS gene model=Glyma15g24670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATCTTGTGCGCAATTCGGGTTGTGGGTGGTCTTGATCTTGTGCTTGGCGTTTCAAATTCAACCCAATTATGGGTTCTACCTTCCGGGCAGTTACCCCCACAACTATGATGTCACGGATGAGTTGTGGGTGAAGGTGAATTCCCTCACTTCCATTGACACAGAAATGCCCTTTAGCTATTACAGCCTGCCCTTTTGCAAGCCCGAGGGTGGCATCAAGGACAGTGCCGAGAACCTTGGGGAGCTTCTCATGGGAGATAGGATAGAGAACTCTCCTTATAGGTTTAGGATGTACACCAATGAGTCTGAGATTTACTTGTGCCAGATCCAGGCGCTGTCCGGGGACCAGTTCAAGATCTTGAAGGAGAGGATTGATGAGATGTATCAGGTTAATTTGATTCTTGATAATTTGCCTGCTATTAGGTTCACACAGAAAGATGGGTACTTTATGAGATGGACTGGGTACCCTGTTGGTATTAAGATTGAGGATGCTTATTATGTGTTTAACCATCTCAAGTTCAATGTTCTTGTCCACAAGTACGAGGAGACCAATGTGGCTCGCGTAATGGGGACTGGAGAGGGTGCAGAAGTGATCCCGGTTGGCAAGGAGGGGTCTTCTGAGAAGCCTGGATACATGGTTGTTGGGTTTGAGGTGATTCCTTGTAGTATTATGCATAATGCTGATTCTGCAAAAAACTTGAAGATGTATGACAAGTACCCGTCATCTATCCGATGTGATCCGGCCACTGTGGCAATGCCTATCAAGGAGGGCCAGCCTGTTGTTTTCACTTATGAGATCACCTTTGAGGAGAGTGACATCAAGTGGCCGTCTAGATGGGATGCTTACTTAAAGATGGAGGGAGCTAAAGTGCATTGGTTCTCTATCCTTAATTCGCTCATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTGATCTTCCTGAGGACAGTTAGAAGGGATCTGACCCGTTATGAGGAGCTCGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTAGTGGGAGATGTTTTCCGCACTCCGACAAATCCTGCTTTGTTGTGTGTGATGGTTGGGGATGGAGTTCAGATTCTTGGGATGTCTGTTGTGACGATATTGTTTGCTGCACTTGGATTCATGTCACCGGCATCTCGGGGAACACTGATCACAGGTATGCTGTTTTTCTATATGATACTTGGTATTGCTGCTGGTTATGTCTCAGTTCGGATGTGGAGGACAATCAGCTTTGGCGAACAGAAGGGCTGGGTGTCAATTGCATGGAAAGCTGCGTGTTTCTTCCCAGGCATTTCCTTTTTGATCCTCACAACCTTGAACTTCCTATTGTGGGGAAGCCACAGCACTGGAGCCATTCCATTTTCACTCTTTGTAATACTAATCTTGCTTTGGTTCTGCATATCTGTACCCCTTACCATTGTTGGTGGCTACTTTGGAGCCAAGGCACCCCACATTGAGTATCCAGTCCGAACCAACCAAATTCCTCGCGAAATTCCCCAGCAGAAGTACCCATCATGGCTGTTAGTTCTTGGTGCTGGCACCCTTCCATTTGGCACCTTGTTCATTGAGCTCTTCTTTATCATGTCCAGCATTTGGATGGGTCGCGTTTACTACGTCTTTGGGTTTCTCTTCGTTGTTTTGATCCTTCTTGTGGTGGTTTGTGCCGAGGTATCTCTAGTTCTGACTTACATGCACCTGTGTGTGGAGGATTGGAAATGGTGGTGGAAATCGTTCTTTGCCTCCGGTTCTGTCGCCATATACATCTTTTTGTACTCTGTTAACTATCTTGTGTTTGACCTCAAGAGTTTGAGCGGTCCTGTGTCTGCAACTCTTTACTTAGGCTACTCACTCTTCATGGTTCTAGCAATCATGCTTTCTACAGGTACAATTGGGTTCCTCTCTTCATTCTGGTTCGTGCATTACTTGTTCTCTTCTGTCAAGTTGGATTGA
Predicted protein sequences of Glyma15g24670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g24670.1 sequence type=predicted peptide gene model=Glyma15g24670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESCAQFGLWVVLILCLAFQIQPNYGFYLPGSYPHNYDVTDELWVKVNSLTSIDTEMPFSYYSLPFCKPEGGIKDSAENLGELLMGDRIENSPYRFRMYTNESEIYLCQIQALSGDQFKILKERIDEMYQVNLILDNLPAIRFTQKDGYFMRWTGYPVGIKIEDAYYVFNHLKFNVLVHKYEETNVARVMGTGEGAEVIPVGKEGSSEKPGYMVVGFEVIPCSIMHNADSAKNLKMYDKYPSSIRCDPATVAMPIKEGQPVVFTYEITFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRTPTNPALLCVMVGDGVQILGMSVVTILFAALGFMSPASRGTLITGMLFFYMILGIAAGYVSVRMWRTISFGEQKGWVSIAWKAACFFPGISFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTIVGGYFGAKAPHIEYPVRTNQIPREIPQQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFVVLILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSVNYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLSTGTIGFLSSFWFVHYLFSSVKLD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
