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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35100 | AT | Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr5:13360459-13361377 REVERSE LENGTH=281 | SoyBase | E_val: 2.00E-108 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0018119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0031977 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| KOG0880 | KOG | Peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR11071 | Panther | CYCLOPHILIN | JGI | ISS | |
| PTHR11071:SF11 | Panther | COP-COATED VESICLE MEMBRANE PROTEIN P24 | JGI | ISS | |
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | ISS | |
| UniRef100_B9SC31 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase, putative n=1 Tax=Ricinus communis RepID=B9SC31_RICCO | SoyBase | E_val: 8.00E-133 | ISS |
| UniRef100_I1MI02 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MI02_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g24560 not represented in the dataset |
Glyma15g24560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g202300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g24560.1 sequence type=CDS gene model=Glyma15g24560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTCTCTCTCCCTCCACCACCACCCTCTCTCTCTCTCCACTTCACGCGCCGCTCCCTCCTCCTCCTCTCCACCACCACCACCCTCTCTCTCCCATCCACACCTCCACCTACTCCCATTCCCACCACCCCCACAGTCACCGACCGCGTCTTCATGGACTTTAGCCTCTGCCCCAACAACTTCCTCCCCGACCGCGCCGACGCCCTCTCCCCTCTCTGCTCCGACTCCAACCTATTGGGTCGCGTCGTATTGGGCCTCTACGGCAACCTCGTCCCCCTCACCGTCTCGAACTTCAAGTCCATGTGTCTGGGCGGCCTCAACGCCACGTCATCCTCGTACAAGAATACGCTCGTCCACAAGGTGTTCCCCGGCCAGTACTTCCTCGCCGGGCGCCAGGGCCGCCCCGACAAGGGCGAGGTCCGCCCGCCGCACGACCTGCCGCGCAACACGGAGACGGTCGACGCTAAGGCGTTCGCCCTCACGCACTCCCGGCCCGGCGTTGTTTCGCTCTCGCTCTCCGAAAACGACGACGACGACGAGATTAAGCTCGATCCTGGGTACCGGAATGTAGAATTCTTGATCACCACTGGTCCCGGGCCTTGCCCCCAGCTCGATAACAAGAACATTGTCTTTGGAACGGTGCTCGAAGGATTGGATGTCATCACAGCTATAGCTTCCATTCCCACATACCAACCATCTGAGCGAATTCGCCAGTTTAACGACTTGGCTCGATTTTTTGGAGATGAAAGGGCTCAGAATGCACGTAACATATGGAACAGGCCTCTTACGAGTGTTTATATTAGTGATTGTGGGGAGCTGAAAGTGACAAAGCCTTCCCTCACGCCTTCTTTGCCATAA
>Glyma15g24560.1 sequence type=predicted peptide gene model=Glyma15g24560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFSLPPPPPSLSLHFTRRSLLLLSTTTTLSLPSTPPPTPIPTTPTVTDRVFMDFSLCPNNFLPDRADALSPLCSDSNLLGRVVLGLYGNLVPLTVSNFKSMCLGGLNATSSSYKNTLVHKVFPGQYFLAGRQGRPDKGEVRPPHDLPRNTETVDAKAFALTHSRPGVVSLSLSENDDDDEIKLDPGYRNVEFLITTGPGPCPQLDNKNIVFGTVLEGLDVITAIASIPTYQPSERIRQFNDLARFFGDERAQNARNIWNRPLTSVYISDCGELKVTKPSLTPSLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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