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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g24100

Feature Type:gene_model
Chromosome:Gm15
Start:24711831
stop:24713624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g24100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15580AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196 SoyBaseE_val: 3.00E-50ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_D7L4D8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4D8_ARALL SoyBaseE_val: 3.00E-49ISS
UniRef100_I1MHZ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHZ7_SOYBN SoyBaseE_val: 2.00E-147ISS

Expression Patterns of Glyma15g24100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g24100 not represented in the dataset
Glyma15g24100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g24100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g201800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g24100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g24100
>Glyma15g24100.1   sequence type=CDS   gene model=Glyma15g24100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCATAGTTTGTGAACTTTTGGTACATGACCAAAACACAATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTACATCGATGTTTGGATTCAAATTCAACTTCTTTAACTTCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCACGAATGTCGCCTTTCCTTATCCTCTTCACTGCAAAGAAGCATGTTATACCAGCCACACCCTGATGAGAATATGGGAGGAGTGGTCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCATAGGAATTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGGCAGAAGAACACGCATAGCAGAGTTTCACACAGAGGTATATGGGTCGAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTAAAACCATGGTTGGAAAATAATTCTCATTGTCCATGCTGTAGAACCACCATTTTTTCCCTCTAG
Predicted protein sequences of Glyma15g24100
>Glyma15g24100.1   sequence type=predicted peptide   gene model=Glyma15g24100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFIVCELLVHDQNTMAGMLPGVECARRRRLHRCLDSNSTSLTSHASTRRSSFCLYASNHECRLSLSSSLQRSMLYQPHPDENMGGVVREAKQRLDDKFRAHRNSENKRQNSTKCVEGRRTRIAEFHTEVYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSHCPCCRTTIFSL*






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