Glyma15g23830 - SoyBase

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Report for Sequence Feature Glyma15g23830

Feature Type:	gene_model
Chromosome:	Gm15
Start:	23835566
stop:	23836607
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g23830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22142	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr3:7803604-7808046 REVERSE LENGTH=1480	SoyBase	E_val: 1.00E-32	ISS
PF02095	PFAM	Extensin-like protein repeat	JGI		ISS
UniRef100_I1MHY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHY1_SOYBN	SoyBase	E_val: 1.00E-97	ISS
UniRef100_P13993	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Repetitive proline-rich cell wall protein 2 n=2 Tax=Glycine max RepID=PRP2_SOYBN	SoyBase	E_val: 2.00E-57	ISS

Expression Patterns of Glyma15g23830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g23830

Paralog	Evidence	Comments
Glyma09g12252	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g23830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g199700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g23830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g23830

Limit To All Plant Sequences

>Glyma15g23830.1   sequence type=CDS   gene model=Glyma15g23830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACATGACTTCCTTAAGCTCCTTAGTGCTGCTCCTTGCAGCTCTAATTCTATTCCCTCAAGTTCTTGCTGACTATGAGAAGGCCCCGGTGTACAAGCCTCCCATTGAGAAGCCACCACTTTACAAGCCCCCAATTGAGAAACCTCCTGTTTATAAACCTCCAGTTGAGAAACCCCCCATTTATAAGCCCCCAGTAGAGAAGCCACCAGTGTACAAGCCTCCAGTAGAGAAACCCCCAGTTTACAAGCCCCCAGTTGAAAAACCACCAGTTGAGAAACCCCCAGTAGAGAAGCCTCCAGTTTACAAGCCCCCAGTTGAAAAACCACCAGTGTACAAGCCACCAGTTGAGAACCCTCCAATTTACAAACCCCCAGTTGAAAAACCACCAGTATACAAGCCCCCAATTGAGAAACCTCCAGTTTATAAGCCACCAGTAGAGAAGCCACCGGTTGAGAAGCCTCCAGTCTACAAGCCACCATATGGAAAGCCACCATACCCAAAGTACCCTCCAATTGATGACACCCATTTCTGA

Predicted protein sequences of Glyma15g23830

Limit To All Plant Sequences

>Glyma15g23830.1   sequence type=predicted peptide   gene model=Glyma15g23830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNMTSLSSLVLLLAALILFPQVLADYEKAPVYKPPIEKPPLYKPPIEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVEKPPVEKPPVYKPPVEKPPVYKPPVENPPIYKPPVEKPPVYKPPIEKPPVYKPPVEKPPVEKPPVYKPPYGKPPYPKYPPIDDTHF*

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