Glyma15g23470 - SoyBase

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Report for Sequence Feature Glyma15g23470

Feature Type:	gene_model
Chromosome:	Gm15
Start:	22821892
stop:	22825747
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g23470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30280	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr1:10662851-10664570 REVERSE LENGTH=455	SoyBase	E_val: 7.00E-78	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0431	KOG	Auxilin-like protein and related proteins containing DnaJ domain	JGI		ISS
PTHR23172	Panther	AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_G7IIX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-G-associated kinase n=1 Tax=Medicago truncatula RepID=G7IIX9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MHW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g23470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g23470

Paralog	Evidence	Comments
Glyma09g11730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g23470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g197100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g23470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g23470

Limit To All Plant Sequences

>Glyma15g23470.1   sequence type=CDS   gene model=Glyma15g23470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAGTCATGGAGAATGCGAATGGGCCTAACGCGGGGGCTCCCTCGCCGACGGTCCATGGAGGACCGCTCCTCCGCCAGAACTCGGCGTTCCATCTTCGCCGGGGCCGCCGAGCCGGAAACCCTCGACCCCGACGACTTCGCCGACGTCTTCGGAGGCCCGCCGAGGAGCCTCCTCGTGCACAAATTCTCGAGGTCGAATTCGTTCTACGAGGAGATTTTCCGTCCGCCGGAGTTTGCGTCTCCGGCGCCGGCGAAGGGCAGCCGGAGCTTGCCGGTGTTTCGGATTCCGGCGAAGAACGAGGCGTTCTACAGCGACATATTCGGGTCGGACGACGACCGGAGGTCGCGGGAGCGGTCGGGGCCGCAGTCGAAGGCAAAATCAAAGTCGAATTCGTCGTCGGCTCTGAGCTCCGAGGAGCTGAGCCCTCTCCGGACGGCGGTCGGTGATGACGTGGCATTGTCTGCCTTTGCTTCCAAGCTCAGGCCAATCAATGTCCCGTGCAGATGGAACTCAACCACTATGATGCCCGGGGAACACCCAATTAAACAAGGGGGGCCACTTTTTCCATGCAATAGTCAGTCATTTGAAATTCAGTTTCAGGACAATGAGTACAAGGAGAGCTTCAAGAGTTCACATTTGGGATTCTCAAGAAGAGTCTCCTCCCCCGAAACTATTAGTCTCGAATCCAATTCATATCAAAGCATGAAGGTATCTGCTGATGACTGGGAAATCAGTTCCCCGTTTTCTGCTGTCTCTGGACTCTGTCAAGAACCTGAGGCAAAATCTTCAGTCCATGATCACTTGTTTCCAGAACTGGTTATAGAGCAGGACGACGACGACGACGAAGTTATGAGCTCCTATGTCATAGAGGTCAACTCTAACCTCAGAGAGGAAAGTTGTGGAACAGCAGACCTTGACGAAGCAATAGCATGGGCCAAGGAGAAGTTTCAATCACGAAATTCTGATGAAGAATCGAGCTCGAGAAATGAAGGCAATGAGCAAGCTACTACAGGAGTGGAAGGAAGGTCTGATGCAGGTGAATGCCACGGTGATGGAATAGGAGAAGTTAAATCTTCGAAGGTACAAACAGAAACAGAGAAGTTGGACAGAGATATAAGATCGTGGTCATCTGGCAAGGAAACTGACATCCGGCTACTCCTTTCAACGCTACATCATATTTTATGGCCTGAGAGTGGCTGGTATGCTGTTCCTCTTCCGAACTTAATAGAAAGTTCACAAGTGAAGAAGGCCTATCAGAAAGCAAGATTATGCCTCCACCCTGACAAACTACAGCAAAGAGGAGCAACATTCCTACAAAAGTATATAGCGGAGAAGGCTTTCTCCATTCTTCAGGATGCATGGACTGCATTCATTTCTGAAGATGTTTCCTTCTAA

Predicted protein sequences of Glyma15g23470

Limit To All Plant Sequences

>Glyma15g23470.1   sequence type=predicted peptide   gene model=Glyma15g23470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDESWRMRMGLTRGLPRRRSMEDRSSARTRRSIFAGAAEPETLDPDDFADVFGGPPRSLLVHKFSRSNSFYEEIFRPPEFASPAPAKGSRSLPVFRIPAKNEAFYSDIFGSDDDRRSRERSGPQSKAKSKSNSSSALSSEELSPLRTAVGDDVALSAFASKLRPINVPCRWNSTTMMPGEHPIKQGGPLFPCNSQSFEIQFQDNEYKESFKSSHLGFSRRVSSPETISLESNSYQSMKVSADDWEISSPFSAVSGLCQEPEAKSSVHDHLFPELVIEQDDDDDEVMSSYVIEVNSNLREESCGTADLDEAIAWAKEKFQSRNSDEESSSRNEGNEQATTGVEGRSDAGECHGDGIGEVKSSKVQTETEKLDRDIRSWSSGKETDIRLLLSTLHHILWPESGWYAVPLPNLIESSQVKKAYQKARLCLHPDKLQQRGATFLQKYIAEKAFSILQDAWTAFISEDVSF*

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