Glyma15g23450 - SoyBase

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Report for Sequence Feature Glyma15g23450

Feature Type:	gene_model
Chromosome:	Gm15
Start:	22792230
stop:	22796352
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g23450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19290	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr1:6666249-6668963 FORWARD LENGTH=904	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF40	Panther	UNKNOWN PROTEIN	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9R7P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R7P1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L263	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L263_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g23450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g23450

Paralog	Evidence	Comments
Glyma09g11690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g23450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g197000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g23450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g23450

Limit To All Plant Sequences

>Glyma15g23450.3   sequence type=transcript   gene model=Glyma15g23450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTTCCCCCCTAGAACAAAAAGCGAAGCTTTAGAACTCCGTCTAGTTTCCCTGCGCGCTGCGCAACACAACGGTGCTACTGCACTGAACCTTCTTTCTCTCCCTCCACTAACTCTGCGTTCCATCATCCACCTCTCCTTCCACAACCACACCCAACAACAACCGATAGCGAAGGCGAGGTCGATCACGAATCCAACGTCCAACGTTGTCGTCAACTAATGCTGTCGTCCACGTCACCACCCAAATGTTCCGTTTCCTCCGCAAACTCCATATTCCCTTCCTCTCACACAGAAGAGCATTCCACTTCTCTCTTCCTCTCTTCCGGAACATTCCAGAGCATTCCCATTCCAATTCCAATGCTAAACCCCCTGACCCCTCCCTCGTGGACCTCATCTCCCGCCTCCTCCTCCGCCGCCGCCCCTCGGCTGTTCTCCGCCGTCTCCACTTCCCCCCCTTCGACCTCCTCAGCGATGCCCTCCTCCGCCGCCCTCTCCTTCTTCACCCTCCTCTCCCAACACCCCCACTACCGCCCCCACGCCACCTCCTTCTGCCTCCTCGTCCACATCCTCGCCCGCGCCAAACTCTTCCCCGAAGCCCGCTCCATCCTCCACCAGCTCCTGCACCAACAACTTCCGCGCCTTCGCCGTCTGCAACGACGTCATCTCCGCCTACCGCGAATTCGGCTTCTCCCCCACCGTCTTCTACATGCTCCTTAAGGCATTTACGGAACGTGGCTTGACGCGGCACGCACTCCACGTGTTCAATGAAATGTCCAAGCTCGGCTGGACCCCCAGCTTGCGGTCCTGCAACTGCCTCCTCGCGAAATTGGTATGGGCCGGTGAAAGAGACACTACATTGATGGTTTTTGAGCAGGTTTTGAAGATGGGGATTGTGCCTGATGTTTATATGATTAGTATTGTTGTGAACACGCATTTGTCGCGGAGGGGGAGTGTGGAACGTGCTGAGAGGTTTGTGGAGAAGATGGAGGGGATGGGGTTTGAGGTTAATGTTGTGGTGTACAATGCTTTGGTTGGAGGGTATGTTTGTTAGGGGGATTTGGATGGGGCTGAGAGGGTGTTGGGTTTGATGTTGGGGAAGGGGGTTGAGAGGAATGTGGTTACTTGGACTTTGTTGATGAAATGTTACTGCAGGCGGGGAAGGGCGGATGAGGCCGAGAGGTTGCTTCGGAGGATGGGGGGGTGGTTTTGGTTGATCATGTGTATGGTGTGTTGGTTGATGGGTTTTGTCAGGCGGGGAGGATGGATGATGCAGTTAGGATTCGAGATGAGATGGAGAGGGTGGGGTTGAGGGTGAATGTGTTTGTTTGTAATGCATTGGTTAATGGGTATTGCAAGCAAGGTCAGGTTGGGAAGGCTGAGAAGGTGTTTAGGGGGATGGGGGGTTGGAATGTGAGACCAGATTTTTATAGCTATAATACACTGTTGGATGGGTACTGCAGGGAAGGGAGGATGGGCAAGGCTTTTATGCTTTGCGAGGAGATGATACGGGAGGGGATTGATCCGTCGGTTGTGACCTATAATATGGTTCTCAAGGGGTTGGTTGATGTGGGGTCTTATGGGGATGCTTTGAGCCTTTGGCGTTTGATGGTGGAACGAGGTGTGGCGCCAAATGAGGTCAGCTATTGTACTCTGCTTGATTGCTTTTTCAAAATGGGAGATTTTGACAGAGCTATGAAGCTTTGGAAAGAGATTTTGGGTCGGGGTTTTAGTAAGAGCACAGTTGCATTCAATACGATGATTGGTGGGTTAGGCAAGATGGGGAAAGTCGTGGAAGCACAGGCTGTTTTTGATAGGATGAAGGAACTTGGATGCTCACCAGATGAAATAACATATAGGACTTTGAGTGATGGATATTGTAAAATTGTTTGTGTTGTTGAAGCTTTTAGAATTAAAGATACGATGGAAAGACAGACAATGTCTCCTTCCATAGAAATGTACAATTCCCTTATTAATGGACTTTTTAAGTCTAGGAAGTCGAGTGATGTTGCTAATCTTCTTGTTGAGATGCAGAGAAGAGGACTATCACCAAAAGCTGTTACCTATGGTACTCATATTTCTGGTTGGTGCAATGAAGAGAAGTTGGACAAAGCTTTCAGTTTATATTTTGAGATGATTGAAAGAGGGTTCTCTCCTAGTTCAGTTATCTGTAGCAAAATAGTCATCAGTCTTTATAAGTATGATAGAATCAATGAAGCAACTGGGATCCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGTCTGTTAAAAATGATTTCATAAGTCTAGAAGCTCAGGGAATTGCGGACTCTCTTGATAAGAGTGCTGTATGTAATTCTCTTCCCAACAGTATTGTGTACAACATAGCTATCTATGGTCTTTGTAAGTCTGGGAAGATTGATGAAGTAAGAAGTGTTCTGTCTATTTTGTTGTCTAGAGGGTTTCTTCACGATAATTTTACATATGGTACCCTAATTCATGCCTGTTCAGCTGCTGGTGATGTGGATGGCGCTTTCAACATAAGGGATGAGATGGTGGAAAGAGGTCTTATCCCAAATATTACTACTTATAATGCGTTAATAAATGGGTTGTGCAAAGTAGGAAATATGGATAGAGCACAGAGACTTTTCCATAAACTTCCTCAAAAAGGCTTAGTTCCCAATGTTGTTACCTATAATATACTAATCAGTGGTTACTGTAGAATTGGTGATCTTAATGAAGCCTCTAAATTGAGAGAGAAGATGATAGAAGGAGGGATTTCTTGAACCCATACTTTGCTTTGATCAGTGGTCTGCTTGGAAGACTCTTTAAAGTTTTGCAATCAAATTATTCTGGGCATATGCTAGTTAAATTCTTCCCTGATACTTATACATAAATTTTGCTAAATGCAAAGTTGAGCTTCTGGCTCAAGACTCAATTTGTACACACCTGCAGCCGTGTTCTGACACATCAATTTCCAAACAAATTTGCCACAGGAAAAATCATTTCTTGCAAATGATTTATAGGTTGGTAATGATCATATTCTACTACCTATTCATCCTCAAGCATCATATTTGAAGTTCTGGAGTTTAATTCTCTTTGTTGTGGAAACTAGATGTGCTTCATGATTAAGTTTTTATTCAAGTAATCAAGGAAAGTGAAAGGTGTTTTTCTTGATGCAATAATGAAATCCCACATCTATTTAGAGGATGGGGAGGACTTGGTTATGGCAGATTTGAATGACTTGGATGCTTGTATGGATTGGTTCATGAAGACTATATTGTTTGATGTCACTAAAAACCATGGGAGTTTTGAGCATGTTTGAAGTCAGATGTTGAAGAACCTAGATGGCATCTGTCCAGCTGTGGCTTGTAATGTGGTTGGAAGCCGAGTTCTAATCAACTCTATATCAGCTTCTCATCCATTTGAAAGGGAAAAAGACTTAAAGACCTCATTTATAGGAGAAACATCGTTTTGGTTTTAGATATATCCTGCTATGTAGGAAGGTAAAATAGCTAGGTCACCCTTCAGGACTTCACAATATCTGGATGATAGAAAGCTTTCTGCATTGAAGATTCTAACTTAAATTACTTTATAGAATAATGCTACATACTCCAAAAAGTAACAGCTAGAGGTGGTTGTTGGATAATATAGAAATGATAGGGACAAATCATTCACTCATCAAGGAGTCAATAAGCTTGCTAACTCTTTTTGTTGAAACTTCTTTCAAAAGGATTCAGGCCATGAATTCTTGTCATTTCAGCAATAGGGGTAAGGGGCTCATTTGGTTGACCTTGTGTTCTTATTGTGACAACTGTGTAGACTTGAGATTGAATCCAGAAATACCCATAGGTAGGTACTTTGTAATCCCATTATAAATACTCATTGAGATTGCCGGTTTTGTCCTGAGATTAGAGTGGGAAGAGCCTGCTTTTCCCTAAACTTTTTTGTACCCAAAAATATTTCTTGCCATTCTTTTGATACACAGTTTGGCCTGCAATTATTAGA

Coding sequences of Glyma15g23450

Limit To All Plant Sequences

>Glyma15g23450.2   sequence type=CDS   gene model=Glyma15g23450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTCCTCCGCCGCCCTCTCCTTCTTCACCCTCCTCTCCCAACACCCCCACTACCGCCCCCACGCCACCTCCTTCTGCCTCCTCCCCGCTCCATCCTCCACCAGCTCCTGCACCAACAACTTCCGCGCCTTCGCCGTCTGCAACGACGTCATCTCCGCCTACCGCGAATTCGGCTTCTCCCCCACCGTCTTCTACATGCTCCTTAAGGCATTTACGGAACGTGGCTTGACGCGGCACGCACTCCACGTGTTCAATGAAATGTCCAAGCTCGGCTGGACCCCCAGCTTGCGGTCCTGCAACTGCCTCCTCGCGAAATTGGTATGGGCCGGTGAAAGAGACACTACATTGATGGTTTTTGAGCAGGTTTTGAAGATGGGGATTGTGCCTGATGTTTATATGATTAGTATTGTTGTGAACACGCATTTGTCGCGGAGGGGGAGTGTGGAACGTGCTGAGAGGTTTGTGGAGAAGATGGAGGGGATGGGGTTTGAGGTTAATGTTGTGGTGTACAATGCTTTGGTTGGAGGGTATGATGGGGGGGTGGTTTTGGTTGATCATGTGTATGGTGTGTTGGTTGATGGGTTTTGTCAGGCGGGGAGGATGGATGATGCAGTTAGGATTCGAGATGAGATGGAGAGGGTGGGGTTGAGGGTGAATGTGTTTGTTTGTAATGCATTGGTTAATGGGTATTGCAAGCAAGGTCAGGTTGGGAAGGCTGAGAAGGTGTTTAGGGGGATGGGGGGTTGGAATGTGAGACCAGATTTTTATAGCTATAATACACTGTTGGATGGGTACTGCAGGGAAGGGAGGATGGGCAAGGCTTTTATGCTTTGCGAGGAGATGATACGGGAGGGGATTGATCCGTCGGTTGTGACCTATAATATGGTTCTCAAGGGGTTGGTTGATGTGGGGTCTTATGGGGATGCTTTGAGCCTTTGGCGTTTGATGGTGGAACGAGGTGTGGCGCCAAATGAGGTCAGCTATTGTACTCTGCTTGATTGCTTTTTCAAAATGGGAGATTTTGACAGAGCTATGAAGCTTTGGAAAGAGATTTTGGGTCGGGGTTTTAGTAAGAGCACAGTTGCATTCAATACGATGATTGGTGGGTTAGGCAAGATGGGGAAAGTCGTGGAAGCACAGGCTGTTTTTGATAGGATGAAGGAACTTGGATGCTCACCAGATGAAATAACATATAGGACTTTGAGTGATGGATATTGTAAAATTGTTTGTGTTGTTGAAGCTTTTAGAATTAAAGATACGATGGAAAGACAGACAATGTCTCCTTCCATAGAAATGTACAATTCCCTTATTAATGGACTTTTTAAGTCTAGGAAGTCGAGTGATGTTGCTAATCTTCTTGTTGAGATGCAGAGAAGAGGACTATCACCAAAAGCTGTTACCTATGGTACTCATATTTCTGGTTGGTGCAATGAAGAGAAGTTGGACAAAGCTTTCAGTTTATATTTTGAGATGATTGAAAGAGGGTTCTCTCCTAGTTCAGTTATCTGTAGCAAAATAGTCATCAGTCTTTATAAGTATGATAGAATCAATGAAGCAACTGGGATCCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGTCTGTTAAAAATGATTTCATAAGTCTAGAAGCTCAGGGAATTGCGGACTCTCTTGATAAGAGTGCTGTATGTAATTCTCTTCCCAACAGTATTGTGTACAACATAGCTATCTATGGTCTTTGTAAGTCTGGGAAGATTGATGAAGTAAGAAGTGTTCTGTCTATTTTGTTGTCTAGAGGGTTTCTTCACGATAATTTTACATATGGTACCCTAATTCATGCCTGTTCAGCTGCTGGTGATGTGGATGGCGCTTTCAACATAAGGGATGAGATGGTGGAAAGAGGTCTTATCCCAAATATTACTACTTATAATGCGTTAATAAATGGGTTGTGCAAAGTAGGAAATATGGATAGAGCACAGAGACTTTTCCATAAACTTCCTCAAAAAGGCTTAGTTCCCAATGTTGTTACCTATAATATACTAATCAGTGGTTACTGTAGAATTGGTGATCTTAATGAAGCCTCTAAATTGAGAGAGAAGATGATAGAAGGAGGGATTTCTTGA

>Glyma15g23450.3   sequence type=CDS   gene model=Glyma15g23450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGCAGTTAGGATTCGAGATGAGATGGAGAGGGTGGGGTTGAGGGTGAATGTGTTTGTTTGTAATGCATTGGTTAATGGGTATTGCAAGCAAGGTCAGGTTGGGAAGGCTGAGAAGGTGTTTAGGGGGATGGGGGGTTGGAATGTGAGACCAGATTTTTATAGCTATAATACACTGTTGGATGGGTACTGCAGGGAAGGGAGGATGGGCAAGGCTTTTATGCTTTGCGAGGAGATGATACGGGAGGGGATTGATCCGTCGGTTGTGACCTATAATATGGTTCTCAAGGGGTTGGTTGATGTGGGGTCTTATGGGGATGCTTTGAGCCTTTGGCGTTTGATGGTGGAACGAGGTGTGGCGCCAAATGAGGTCAGCTATTGTACTCTGCTTGATTGCTTTTTCAAAATGGGAGATTTTGACAGAGCTATGAAGCTTTGGAAAGAGATTTTGGGTCGGGGTTTTAGTAAGAGCACAGTTGCATTCAATACGATGATTGGTGGGTTAGGCAAGATGGGGAAAGTCGTGGAAGCACAGGCTGTTTTTGATAGGATGAAGGAACTTGGATGCTCACCAGATGAAATAACATATAGGACTTTGAGTGATGGATATTGTAAAATTGTTTGTGTTGTTGAAGCTTTTAGAATTAAAGATACGATGGAAAGACAGACAATGTCTCCTTCCATAGAAATGTACAATTCCCTTATTAATGGACTTTTTAAGTCTAGGAAGTCGAGTGATGTTGCTAATCTTCTTGTTGAGATGCAGAGAAGAGGACTATCACCAAAAGCTGTTACCTATGGTACTCATATTTCTGGTTGGTGCAATGAAGAGAAGTTGGACAAAGCTTTCAGTTTATATTTTGAGATGATTGAAAGAGGGTTCTCTCCTAGTTCAGTTATCTGTAGCAAAATAGTCATCAGTCTTTATAAGTATGATAGAATCAATGAAGCAACTGGGATCCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGTCTGTTAAAAATGATTTCATAAGTCTAGAAGCTCAGGGAATTGCGGACTCTCTTGATAAGAGTGCTGTATGTAATTCTCTTCCCAACAGTATTGTGTACAACATAGCTATCTATGGTCTTTGTAAGTCTGGGAAGATTGATGAAGTAAGAAGTGTTCTGTCTATTTTGTTGTCTAGAGGGTTTCTTCACGATAATTTTACATATGGTACCCTAATTCATGCCTGTTCAGCTGCTGGTGATGTGGATGGCGCTTTCAACATAAGGGATGAGATGGTGGAAAGAGGTCTTATCCCAAATATTACTACTTATAATGCGTTAATAAATGGGTTGTGCAAAGTAGGAAATATGGATAGAGCACAGAGACTTTTCCATAAACTTCCTCAAAAAGGCTTAGTTCCCAATGTTGTTACCTATAATATACTAATCAGTGGTTACTGTAGAATTGGTGATCTTAATGAAGCCTCTAAATTGAGAGAGAAGATGATAGAAGGAGGGATTTCTTGA

Predicted protein sequences of Glyma15g23450

Limit To All Plant Sequences

>Glyma15g23450.2   sequence type=predicted peptide   gene model=Glyma15g23450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSSAALSFFTLLSQHPHYRPHATSFCLLPAPSSTSSCTNNFRAFAVCNDVISAYREFGFSPTVFYMLLKAFTERGLTRHALHVFNEMSKLGWTPSLRSCNCLLAKLVWAGERDTTLMVFEQVLKMGIVPDVYMISIVVNTHLSRRGSVERAERFVEKMEGMGFEVNVVVYNALVGGYDGGVVLVDHVYGVLVDGFCQAGRMDDAVRIRDEMERVGLRVNVFVCNALVNGYCKQGQVGKAEKVFRGMGGWNVRPDFYSYNTLLDGYCREGRMGKAFMLCEEMIREGIDPSVVTYNMVLKGLVDVGSYGDALSLWRLMVERGVAPNEVSYCTLLDCFFKMGDFDRAMKLWKEILGRGFSKSTVAFNTMIGGLGKMGKVVEAQAVFDRMKELGCSPDEITYRTLSDGYCKIVCVVEAFRIKDTMERQTMSPSIEMYNSLINGLFKSRKSSDVANLLVEMQRRGLSPKAVTYGTHISGWCNEEKLDKAFSLYFEMIERGFSPSSVICSKIVISLYKYDRINEATGILDKMVDFDLLTVHKCSDKSVKNDFISLEAQGIADSLDKSAVCNSLPNSIVYNIAIYGLCKSGKIDEVRSVLSILLSRGFLHDNFTYGTLIHACSAAGDVDGAFNIRDEMVERGLIPNITTYNALINGLCKVGNMDRAQRLFHKLPQKGLVPNVVTYNILISGYCRIGDLNEASKLREKMIEGGIS*

>Glyma15g23450.3   sequence type=predicted peptide   gene model=Glyma15g23450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDAVRIRDEMERVGLRVNVFVCNALVNGYCKQGQVGKAEKVFRGMGGWNVRPDFYSYNTLLDGYCREGRMGKAFMLCEEMIREGIDPSVVTYNMVLKGLVDVGSYGDALSLWRLMVERGVAPNEVSYCTLLDCFFKMGDFDRAMKLWKEILGRGFSKSTVAFNTMIGGLGKMGKVVEAQAVFDRMKELGCSPDEITYRTLSDGYCKIVCVVEAFRIKDTMERQTMSPSIEMYNSLINGLFKSRKSSDVANLLVEMQRRGLSPKAVTYGTHISGWCNEEKLDKAFSLYFEMIERGFSPSSVICSKIVISLYKYDRINEATGILDKMVDFDLLTVHKCSDKSVKNDFISLEAQGIADSLDKSAVCNSLPNSIVYNIAIYGLCKSGKIDEVRSVLSILLSRGFLHDNFTYGTLIHACSAAGDVDGAFNIRDEMVERGLIPNITTYNALINGLCKVGNMDRAQRLFHKLPQKGLVPNVVTYNILISGYCRIGDLNEASKLREKMIEGGIS*

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