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Report for Sequence Feature Glyma15g23435

Feature Type:gene_model
Chromosome:Gm15
Start:22777926
stop:22781467
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g23435
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29380AT Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr1:10284209-10285671 FORWARD LENGTH=315 SoyBaseE_val: 4.00E-35ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_G7IIX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7IIX1_MEDTR SoyBaseE_val: 4.00E-69ISS
UniRef100_I1MHW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHW3_SOYBN SoyBaseE_val: 2.00E-80ISS

Expression Patterns of Glyma15g23435
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g23435 not represented in the dataset
Glyma15g23435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g23435
ParalogEvidenceComments
Glyma09g11676 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g23435 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g196900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g23435
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g23435
>Glyma15g23435.2   sequence type=transcript   gene model=Glyma15g23435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGAATTCTTCATTACTACCCCAAAAGGCACGCAGTACAAGACTATAGTGCATCAGCTTTAACTTTTAGTTCAGTCCCATATACAGTGGCCAATAAAAGCACAAAAGAGCATGACATTGTAGTGTGTACTACAAATATCACCATCCAATTAAAGTATATATGTTTCAGCTCCCATGTGTCAGATTAATACTAGATCTCCCTTTTGCCTTTTACCCATCATTCTCCTTTTTCTCTTTCTGAAACTTACTCTTGCTTGCTAATTTCAAATATCCAATGCCTCATTTCCCAAGTTTTCTTATATTCTTCCTTCTCTCTTTGATCCAAGACAGCAATGATTCCCAAGCTTTTATTATATATATACAAAAGATGGGGGCTAAAAGAAAAAGTTCTACCTCACATAAATCTGCACTTCTTAAACATTGCTCATCCAAACCCAGAAAGAAAAATCAGAATCAAGACAAAACAACCTGCAGAGTGCAGATATGGGAGTTAGAAGTTGGCGCCATGTGTTGTTCTCCTTGTGTCTTGTCTTCAATTCAGGCCTATGTAAAGCCACAACACTAAGAGAAGAAGAACACCAAGAAATCTCATATGAATTTGGTACCAAGTTGGATGCAGTTCCTGTAGTAAACCCTACAACTCCAGGCACAACAAATCCATACCCTACACTAAACCCAACAACTCCTCAAGCACCTGGCTCAACAGGACAAACCCCATCAACCCCACCCACAACCCCATACATGACCCCTATAAACCCTTACACAAACCCCACAACCCCGAAAACAAGCCCTACAAACCCATACACTAACCCTACAACTCCAACTATGACTCCACCTAGCCCAACTACTACTCCCACAACCCCAACCACTCCTACTACTGCATCATCAGATTGTTCTGCAATTCAACCAGGAGCAAGCTGTTACAACCCAAATACTCTGAAAGACCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCTGCTCCTACAAGCTGCGCATTTGGAGGAACTGCCACACTTACAAACAAGGATCCTAGTAATGGGAACTGCCGCTATACATCCTCCAAAACACCAAGCATGACTCCACCAACACCAACTTATGTAAGCCCCCCAAATCCACCAAGCACCATGACCCCAACAACACCAACTACTATGACCCCATCTGCACCAAGTACTATGACACCAACTACACCAGGTATCATGACCCCAACTGCACCAGGCATGACAACAATTCCTGGTGGAGCCTCAGTCTATGGTACAGGACCAGCAGGAAGCCCCAACACAGCAACATTTGCTTCACATTCTGAAGTGCTTCTACTTACCTTATTTGGCTTGTGGGCTTCGCTTCGTGTAGAAAATTACATCTAGATGATAAACAAGGGACACTCATTCAGTAATTCTTTATGTGATAGACTAGAACTCCCTCAGTCTTCAGCAGCTTTTGCAAGACTACACAAGGAGGCAGAGTCAACATGGCATATTTGTCATATGAATTCTCTCCCCCATTAAAATTAGTACTATCTTGCAAAAATGTATCCCCTTAGTAGATCATAAAGCATGAGCAAAATGGTAGAGCCAATACGATTTATAGGTAGACAGGTATTTTACAGTATTAGCAGAGAATAAAAAATTATTAGAGTATCTACTATTCTACTTCCATTTATAACTTCTTCCAGAGATAATTCATGAAACTAACAGAAGGCTGCTTGAGATAATCTATCTTATCCAATTTGGC
Coding sequences of Glyma15g23435
>Glyma15g23435.1   sequence type=CDS   gene model=Glyma15g23435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTAGAAGTTGGCGCCATGTGTTGTTCTCCTTGTGTCTTGTCTTCAATTCAGGCCTATGTAAAGCCACAACACTAAGAGAAGAAGAACACCAAGAAATCTCATATGAATTTGGTACCAAGTTGGATGCAGTTCCTGTAGTAAACCCTACAACTCCAGGCACAACAAATCCATACCCTACACTAAACCCAACAACTCCTCAAGCACCTGGCTCAACAGGACAAACCCCATCAACCCCACCCACAACCCCATACATGACCCCTATAAACCCTTACACAAACCCCACAACCCCGAAAACAAGCCCTACAAACCCATACACTAACCCTACAACTCCAACTATGACTCCACCTAGCCCAACTACTACTCCCACAACCCCAACCACTCCTACTACTGCATCATCAGGTGGTCAATGGTGTGTTGCAAGCCAATCAGCTGCAGAGAACACTCTGAAGGTGGCTCTTGACTATGCTTGTGGCTATGGTGCAGATTGTTCTGCAATTCAACCAGGAGCAAGCTGTTACAACCCAAATACTCTGAAAGACCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCTGCTCCTACAAGCTGCGCATTTGGAGGAACTGCCACACTTACAAACAAGGATCCTAGTAATGGGAACTGCCGCTATACATCCTCCAAAACACCAAGCATGACTCCACCAACACCAACTTATGTAAGCCCCCCAAATCCACCAAGCACCATGACCCCAACAACACCAACTACTATGACCCCATCTGCACCAAGTACTATGACACCAACTACACCAGGTATCATGACCCCAACTGCACCAGGCATGACAACAATTCCTGGTGGAGCCTCAGTCTATGGTACAGGACCAGCAGGAAGCCCCAACACAGCAACATTTGCTTCACATTCTGAAGTGCTTCTACTTACCTTATTTGGCTTGTGGGCTTCGCTTCGTGTAGAAAATTACATCTAG

>Glyma15g23435.2   sequence type=CDS   gene model=Glyma15g23435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTAGAAGTTGGCGCCATGTGTTGTTCTCCTTGTGTCTTGTCTTCAATTCAGGCCTATGTAAAGCCACAACACTAAGAGAAGAAGAACACCAAGAAATCTCATATGAATTTGGTACCAAGTTGGATGCAGTTCCTGTAGTAAACCCTACAACTCCAGGCACAACAAATCCATACCCTACACTAAACCCAACAACTCCTCAAGCACCTGGCTCAACAGGACAAACCCCATCAACCCCACCCACAACCCCATACATGACCCCTATAAACCCTTACACAAACCCCACAACCCCGAAAACAAGCCCTACAAACCCATACACTAACCCTACAACTCCAACTATGACTCCACCTAGCCCAACTACTACTCCCACAACCCCAACCACTCCTACTACTGCATCATCAGATTGTTCTGCAATTCAACCAGGAGCAAGCTGTTACAACCCAAATACTCTGAAAGACCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCTGCTCCTACAAGCTGCGCATTTGGAGGAACTGCCACACTTACAAACAAGGATCCTAGTAATGGGAACTGCCGCTATACATCCTCCAAAACACCAAGCATGACTCCACCAACACCAACTTATGTAAGCCCCCCAAATCCACCAAGCACCATGACCCCAACAACACCAACTACTATGACCCCATCTGCACCAAGTACTATGACACCAACTACACCAGGTATCATGACCCCAACTGCACCAGGCATGACAACAATTCCTGGTGGAGCCTCAGTCTATGGTACAGGACCAGCAGGAAGCCCCAACACAGCAACATTTGCTTCACATTCTGAAGTGCTTCTACTTACCTTATTTGGCTTGTGGGCTTCGCTTCGTGTAGAAAATTACATCTAG
Predicted protein sequences of Glyma15g23435
>Glyma15g23435.1   sequence type=predicted peptide   gene model=Glyma15g23435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVRSWRHVLFSLCLVFNSGLCKATTLREEEHQEISYEFGTKLDAVPVVNPTTPGTTNPYPTLNPTTPQAPGSTGQTPSTPPTTPYMTPINPYTNPTTPKTSPTNPYTNPTTPTMTPPSPTTTPTTPTTPTTASSGGQWCVASQSAAENTLKVALDYACGYGADCSAIQPGASCYNPNTLKDHASYAFNDYYQKNPAPTSCAFGGTATLTNKDPSNGNCRYTSSKTPSMTPPTPTYVSPPNPPSTMTPTTPTTMTPSAPSTMTPTTPGIMTPTAPGMTTIPGGASVYGTGPAGSPNTATFASHSEVLLLTLFGLWASLRVENYI*

>Glyma15g23435.2   sequence type=predicted peptide   gene model=Glyma15g23435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVRSWRHVLFSLCLVFNSGLCKATTLREEEHQEISYEFGTKLDAVPVVNPTTPGTTNPYPTLNPTTPQAPGSTGQTPSTPPTTPYMTPINPYTNPTTPKTSPTNPYTNPTTPTMTPPSPTTTPTTPTTPTTASSDCSAIQPGASCYNPNTLKDHASYAFNDYYQKNPAPTSCAFGGTATLTNKDPSNGNCRYTSSKTPSMTPPTPTYVSPPNPPSTMTPTTPTTMTPSAPSTMTPTTPGIMTPTAPGMTTIPGGASVYGTGPAGSPNTATFASHSEVLLLTLFGLWASLRVENYI*






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