SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65030 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr1:24156798-24158511 FORWARD LENGTH=345 | SoyBase | E_val: 5.00E-42 | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF162 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7IIU2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: p21-activated protein kinase-interacting protein 1-like protein n=1 Tax=Medicago truncatula RepID=G7IIU2_MEDTR | SoyBase | E_val: 1.00E-47 | ISS |
| UniRef100_I1MHV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MHV5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g23260 not represented in the dataset |
Glyma15g23260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g23260.1 sequence type=CDS gene model=Glyma15g23260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAGACTAATCGTCCATCTAATTACACTTAAAATTTCTCATTCTTCCATTAAAAATGTATTTTCGAGGATCGAATTTAAATTTTTTTTCATAAATTCAGCATGTATTGCCAATTTTTATAGAAATAATCCACCAAATTATTTTTATAAAATAAAATCAATTCGATTTAGGTTTAATTTCCATCCGAACCTATTCGTTTCCGTCCACCGCAAACACGCCATCAACGACCTCGCCATCCACCCCTCCGGCGAGGTAGCCCTCACCATCTCACAAGACAAGTGTTTCGCCGTTGTTGATCTCATGCATGGCCTCGTCGTGGACTGCCGGAGCTTCTGCCGCCCGCTCGGCAAGGAAGAGAGTTTGAGTTTGGTGAAGTTCAATGCTGCCGGCGACAGGTTTTTCGTCGCGGCACTGGAGAAGGTCTCCGTCTACGTCACCAAGACTGAGCGGTTTTTGTTAGAATTTGAGTGCTCGAAGCGTCTAGGAACGCATTATCAATTAGGGTTTAATATTTTGATGAATAAAAGAGGAGAAAGGGAAGCATTGTTGCTGAAATTGCTGACTGGGAAGTATATGTTATGCTGGTCAATGGGACATGGTGTTTCCACCGAAGGGCATAGTACTCGTGTGAAAGGTATCGTTGTGACCACAGATAGTGATGGTGATGAGCCTTACCTAATGGCATTTGGGTCATCTGATGGCATTATACGTTTCTGGGATGTTCGAATGGCTGCTAGGGAGAAGCCACTAGTTGAGTGTAATACAAATTCTAGATTGACGTGCCTTGCTGGATCATATCATAAATGTAACCTGTAA
>Glyma15g23260.1 sequence type=predicted peptide gene model=Glyma15g23260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IRLIVHLITLKISHSSIKNVFSRIEFKFFFINSACIANFYRNNPPNYFYKIKSIRFRFNFHPNLFVSVHRKHAINDLAIHPSGEVALTISQDKCFAVVDLMHGLVVDCRSFCRPLGKEESLSLVKFNAAGDRFFVAALEKVSVYVTKTERFLLEFECSKRLGTHYQLGFNILMNKRGEREALLLKLLTGKYMLCWSMGHGVSTEGHSTRVKGIVVTTDSDGDEPYLMAFGSSDGIIRFWDVRMAAREKPLVECNTNSRLTCLAGSYHKCNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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