Glyma15g23220 - SoyBase

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Report for Sequence Feature Glyma15g23220

Feature Type:	gene_model
Chromosome:	Gm15
Start:	22303744
stop:	22305754
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g23220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18100	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L32e \| chr4:10035715-10036475 REVERSE LENGTH=133	SoyBase	E_val: 3.00E-83	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0878	KOG	60S ribosomal protein L32	JGI		ISS
PTHR23413	Panther	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	JGI		ISS
PF01655	PFAM	Ribosomal protein L32	JGI		ISS
UniRef100_B9T5H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L32, putative n=1 Tax=Ricinus communis RepID=B9T5H6_RICCO	SoyBase	E_val: 7.00E-85	ISS
UniRef100_C6SXB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXB4_SOYBN	SoyBase	E_val: 2.00E-92	ISS

Expression Patterns of Glyma15g23220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g23220 not represented in the dataset	Glyma15g23220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g23220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g195500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g23220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g23220

Limit To All Plant Sequences

>Glyma15g23220.1   sequence type=CDS   gene model=Glyma15g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTACCCTTGCTCTCCAAGAGGATCGTGAAGAAGCGCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAACCCGCCATTATCTACCAAATGGTTTCAAGAAATTTGTCGTGCACAATGTGAAAGACCTGGAACTTCTCATGATGCATAACAGGACATACTGTGCTGAGATTGCTCACAATGTATCCACAAGGAAGAGGAAAGACATAGTTGAGAGAGCTGCTCAGCTTGATGTTGTCTTGACGAACAAGACAGCCAGACTACGTAGCCAGGAGGATGAGTAG

Predicted protein sequences of Glyma15g23220

Limit To All Plant Sequences

>Glyma15g23220.1   sequence type=predicted peptide   gene model=Glyma15g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVPLLSKRIVKKRVKKFIRPQSDRKISVKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVLTNKTARLRSQEDE*

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