Glyma15g22410 - SoyBase

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Report for Sequence Feature Glyma15g22410

Feature Type:	gene_model
Chromosome:	Gm15
Start:	21016526
stop:	21026010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g22410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34680	AT	Annotation by Michelle Graham. TAIR10: Outer arm dynein light chain 1 protein \| chr2:14616947-14628300 REVERSE LENGTH=1708	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010102	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045595	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PTHR10588	Panther	PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT	JGI		ISS
PTHR10588:SF23	Panther	PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7ISW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 1 regulatory subunit n=1 Tax=Medicago truncatula RepID=G7ISW5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD27	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD27 related cluster n=1 Tax=unknown RepID=UPI000233BD27	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g22410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g22410

Paralog	Evidence	Comments
Glyma09g10280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g22410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g192800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g22410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g22410

Limit To All Plant Sequences

>Glyma15g22410.1   sequence type=CDS   gene model=Glyma15g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTGTCGTCGGAGAAATCCGGCGAAGACGTGGCGCCGGAAATGCTTCAGAGTTCTCCGAAGAAGAATGTTCCAGAAGCTTCCAGAAGAGCTGCGAAAACGGTTGCTGACGGTCCGGTTTCGGCGAAGAGGAAGGTTGAACCGCGGACCGGTTCGGTCACGGCTGCGACGAAGAGATCAGGTTCAATCGGAGGTTCTGCGAGTGCGGGTTCTGCGCCGAGACGGAACAGCACCGGAGGATTGTCTCAGAAAGCGTCGATCTCCGATGGAAGGAGAAAAACCGGTGCGGAATCTGCCGCCGGAGCTAGGAGCGGTGCTTCGTCGGGGAGCGAGCCTGTGCGGAGGTCGCTACCGGAGCTCCGGCGAAGTTCGGTGACTTCTTCACGCGTTGCTGTGAAGCCGGCTGTGGCCTCGCCGGCGGCTCCGGCTTCGGCTTCGAGAACTTCCGTTGCGAGTAAGGTGGAGGTGGCGAAGAAGCCGGTGAGTAAGCCGGCATTGTCGGCTTTGACTTCGGCTTCGTCGTTGTCGAGAAGGATTGGTTCTTCGTCGGTGGATAGCACTGCCAGCAGCAGCGGTTCTGCTCGGAGGACGGTTTCAAGGGTTTCGTCGCCGACAGTTTCGAGCGGGTTGAAGGCGGGGTATCTGTCGACGTCGCAGGATAGGACGTCGGCGATGTCTGGGAGGAGGAAGGGAAGCACTGCTGATAGCAGGGATTCTCGGTTTATTGTTCTTCCGCAAGTTGAGATTAAGGCCAATGATGATTTGAGACTGGATCTTAGAGGACACAGAGTTCGTAGTCTCAATGCCAGTGGATTAAACTTATCCTCAAACCTAGAGTTTGTTTATCTCCGAGATAATCTCTTGTCTACACTGGAAGGAGTAGAAGTATTGACGAGAGTGAAGGTTCTTGATTTGAGTTTTAATGAATTTAAGGGACCTGGATTTGAGCCTCTTGAAAATTGCAAAGTACTGCAGCAACTCTATCTCGCTGGAAATCAAATCACATCATTGGCAAGTCTCCCTCAACTTCCTAATTTGGAGTTCCTGTCAGTAGCTCAGAATAAGTTGAAGTCTCTTACTATGGCTAGCCAACCTCGACTCCAGGTCTTAGCTGCCAGCAAAAACAAAATTTCTACTCTTAAGGGTTTCCCATATTTACCGGTTCTTGAGCATTTGCGAGTAGAGGAGAATCCTATACTTAAGATGCCTCATTTGGAAGCAGCCTCAATATTACTAGTTGGGCCTACTTTGAAAAAATTCAATGATAGAGATCTCTCTCGTGAGGAAGTGGCACTAGCAAAGCGTTATCCTGCACATACAGCTTTGTGCATTAGAGATGGTTGGGAGTTTAATCGCCCTGAGCATGCTGCAGAGTCAACTTTCCGCTTTTTAGTTGAGAAATGGAAGGACCATATTCCTCTGGATTTTTTTCTCAAAGAAGCCTCCATAGATAAACCTGTGGAAGAAGATATGTGTCGTTGTCATTTCACAATTATTCATGATGGTGCAGCTAGTACAGACCCACCATTAGTTTTAAAATATCAATGGTTTTGTGGTGATATATCACTTTCAAATTTTATCCCTATTCCAGAGGCTACTGATGAGGTTTACTGGCCAAAGCATGATGACATTGGTAAAGTTCTGAAAGTGGAATGCTCTCTCACTTTAGGAGAAATGGTGTATCCTCCTATATTTGCCATCTCTTCTCGTATTTCACGAGTTGATCAAGAACACAATTTGTCAGGCTGTTCACAGAATCTGTATGAAGATAGATCCTTGGATACTCATCTTGAACAGGGATGCAGTAGACTTTGA

Predicted protein sequences of Glyma15g22410

Limit To All Plant Sequences

>Glyma15g22410.1   sequence type=predicted peptide   gene model=Glyma15g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSSEKSGEDVAPEMLQSSPKKNVPEASRRAAKTVADGPVSAKRKVEPRTGSVTAATKRSGSIGGSASAGSAPRRNSTGGLSQKASISDGRRKTGAESAAGARSGASSGSEPVRRSLPELRRSSVTSSRVAVKPAVASPAAPASASRTSVASKVEVAKKPVSKPALSALTSASSLSRRIGSSSVDSTASSSGSARRTVSRVSSPTVSSGLKAGYLSTSQDRTSAMSGRRKGSTADSRDSRFIVLPQVEIKANDDLRLDLRGHRVRSLNASGLNLSSNLEFVYLRDNLLSTLEGVEVLTRVKVLDLSFNEFKGPGFEPLENCKVLQQLYLAGNQITSLASLPQLPNLEFLSVAQNKLKSLTMASQPRLQVLAASKNKISTLKGFPYLPVLEHLRVEENPILKMPHLEAASILLVGPTLKKFNDRDLSREEVALAKRYPAHTALCIRDGWEFNRPEHAAESTFRFLVEKWKDHIPLDFFLKEASIDKPVEEDMCRCHFTIIHDGAASTDPPLVLKYQWFCGDISLSNFIPIPEATDEVYWPKHDDIGKVLKVECSLTLGEMVYPPIFAISSRISRVDQEHNLSGCSQNLYEDRSLDTHLEQGCSRL*

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