Glyma15g22140 - SoyBase

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Report for Sequence Feature Glyma15g22140

Feature Type:	gene_model
Chromosome:	Gm15
Start:	20784967
stop:	20790401
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g22140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20380	AT	Annotation by Michelle Graham. TAIR10: LSD1 zinc finger family protein \| chr4:11005012-11006438 FORWARD LENGTH=189	SoyBase	E_val: 2.00E-62	ISS
GO:0000303	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to superoxide	SoyBase	N/A	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0002240	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of oomycetes origin	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009743	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010104	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010602	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of 1-aminocyclopropane-1-carboxylate metabolic process	SoyBase	N/A	ISS
GO:0010618	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerenchyma formation	SoyBase	N/A	ISS
GO:0043067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF06943	PFAM	LSD1 zinc finger	JGI		ISS
UniRef100_G7L9L5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lsd1-like protein n=2 Tax=Medicago truncatula RepID=G7L9L5_MEDTR	SoyBase	E_val: 1.00E-90	ISS
UniRef100_I1MHR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHR9_SOYBN	SoyBase	E_val: 1.00E-125	ISS

Expression Patterns of Glyma15g22140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g22140 not represented in the dataset	Glyma15g22140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g22140

Paralog	Evidence	Comments
Glyma09g10010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g22140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g192000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g22140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g22140

Limit To All Plant Sequences

>Glyma15g22140.2   sequence type=transcript   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAACGCGGTGAAGTTTCGTAATCCGCGTATTCAAGGAAGGAAGGAAGTTATTATAAGCAGACTTGAATTTGAAGGCCAAATCAAAATATTGGTATAGCCGCGAGCGAGGTTTCGTTTCGTTCAGTTCACACATTCTAATCTCTATCGATTCCTCTTCCATTTTCTCAATTCACTACACCCCAGTTTATGGGAAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTACCTCTGTTCCTCCTCCTGGAATGGACATGTCACAACTTTATTGTGGAGGCTGTACGACATTGCTAATGTACACACGTGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTACCAGTACTAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGATACTTGTCACATTATCATGTTATACAAGTGTAAAGAGAACATTATTTGATTCATCAGCTGCTGGTGCTCAAAGATATTGTTCGTATATGTGACTTTGCAGCATAGAAGTTAAAAATATTTTTGTTCTAAACGACATTTAGACTGATTTAATTTACGTATATGAATACGAGGACAAGTGGAAAGGGCACAAAACTTGTCATTTGTGCAATTGCCTAGGTCCTCTTTTTGCTGTAGTTGGATCACAGGGTTTTTCACATCTCGAATTACAAGTCGTAGATGCACATTTGTTTCCTCTTCTTTGGTGACTTGATTCGTATATTCAGATGTGTTAATAATAGTTTTATTATGCAAGCATATAACCTGATAAGGTGCCTAGAGTCAACTGGCGCAGAAATACAATATCGACCTGCTTGAACATTAAGTATGAGTAATGAAGTACTTATAGGAGAAGAAAATTAGAAAGAAAAATGAGATTTTTTTTTTCCTTTTGTTAAAATTAACTTGTACACAAGTTAAAAATCAACTTTTGGATAAATTAATGGAGTAAATAGACATTTTGGTCCTTGACTTTT

>Glyma15g22140.3   sequence type=transcript   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACAAAATAAAAGTGGTCAACTAAATATTCAAAATCAAATACAATGCTAATATCTATCATCAATCTTCATTTCCAAGGCCAGCTATCTCTTCATCATCAATCGCCTCTTTGAGTGCATTTGGGATCGAGCAGTTCATCTAGCTGACTAGCTTCTTTGTGGTGTTCTGCTAGGAGGTGTCTTTTTCAGATCTTCAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGATACTTGTCACATTATCATGTTATACAAGTGTAAAGAGAACATTATTTGATTCATCAGCTGCTGGTGCTCAAAGATATTGTTCGTATATGTGACTTTGCAGCATAGAAGTTAAAAATATTTTTGTTCTAAACGACATTTAGACTGATTTAATTTACGTATATGAATACGAGGACAAGTGGAAAGGGCACAAAACTTGTCATTTGTGCAATTGCCTAGGTCCTCTTTTTGCTGTAGTTGGATCACAGGGTTTTTCACATCTCGAATTACAAGTCGTAGATGCACATTTGTTTCCTCTTCTTTGGTGACTTGATTCGTATATTCAGATGTGTTAATAATAGTTTTATTATGCAAGCATATAACCTGATAAGGTGCCTAGAGTCAACTGGCGCAGAAATACAATATCGACCTGCTTGAACATTAAGTATGAGTAATGAAGTACTTATAGGAGAAGAAAATTAGAAAGAAAAATGAGATTTTTTTTTTCCTTTTGTTAAAATTAACTTGTACACAAGTTAAAAATCAACTTTTGGATAAATTAATGGAGTAAATAGACATTTTGGTCCTTGACTTTT

Coding sequences of Glyma15g22140

Limit To All Plant Sequences

>Glyma15g22140.1   sequence type=CDS   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTACCTCTGTTCCTCCTCCTGGAATGGACATGTCACAACTTTATTGTGGAGGCTGTACGACATTGCTAATGTACACACGTGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTACCAGTACTAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTAATTACTACATCTTTTGCTTTTTGGCTAGTTTTGGATGCATGTTTGACTTAA

>Glyma15g22140.2   sequence type=CDS   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTACCTCTGTTCCTCCTCCTGGAATGGACATGTCACAACTTTATTGTGGAGGCTGTACGACATTGCTAATGTACACACGTGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTACCAGTACTAGAATCTAATCAAGTCATTCATTGTACGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA

>Glyma15g22140.3   sequence type=CDS   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCTTATGGAGCTTCCTCAGTAAAATGTGCAATTTGTCGCTATATTACTAATGTCAGTATGACGAATGGAAGGCTTCCAATTCCTGTACAGAGACCAAATGGAACAGCCAACTCTGGAACAGTATCTTCTACTTCATCGTCAATGCCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCCATGTCTGTTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA

Predicted protein sequences of Glyma15g22140

Limit To All Plant Sequences

>Glyma15g22140.1   sequence type=predicted peptide   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQVIHCTNCRTTLMYPYGASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSSMPHSQSQTVVVENPMSVDSSGKLVITTSFAFWLVLDACLT*

>Glyma15g22140.2   sequence type=predicted peptide   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQVIHCTNCRTTLMYPYGASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK*

>Glyma15g22140.3   sequence type=predicted peptide   gene model=Glyma15g22140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPYGASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK*

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