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Report for Sequence Feature Glyma15g22100

Feature Type:gene_model
Chromosome:Gm15
Start:20735161
stop:20736691
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g22100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44550AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr5:17942100-17943174 REVERSE LENGTH=197 SoyBaseE_val: 1.00E-60ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF45Panther SUBFAMILY NOT NAMED JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6TG62UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 9 n=1 Tax=Glycine max RepID=CSPL9_SOYBN SoyBaseE_val: 9.00E-102ISS
UniRef100_I1MHR8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MHR8_SOYBN SoyBaseE_val: 3.00E-113ISS

Expression Patterns of Glyma15g22100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g22100
ParalogEvidenceComments
Glyma09g09990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g22100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g191800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g22100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g22100
>Glyma15g22100.2   sequence type=CDS   gene model=Glyma15g22100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGAAAATGGAGAGAAAGTGGAGATAGGTTTGAATGCAGTTCCTCAAGAGACACATAAGCCAAAGAAGGATTGGGTTCTTTTGTCCCTCAGAATGGTTGCATTTTTTGCCACTGCTTCTGCCACACTTGTGATGACTTTTAACAAACAAACCAAAAGCTTCGTAGTTGCCACCGTCGGTAGCACTCCAATAACAGCCACTCTTGCTGCAAAGTTTAACCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCCAGTCTGCATAACTTGGTGATGATAGTAATGGAAGTATTAGGACCCCGATATGATTACAAAGGACTCCGGCTTGCACTAATTGCAATATTAGATATGATGACTATGGCTCTGGCTTCAGCTGGGGATGGTGCAGCAACATTCATGTCTGAATTGGGAAAGAATGGTAATTCACACGCAAGGTGGGATAAGATCTGTGACAAGTTTGAAACCTATTGCAACCGAGGTGGTGCTGCCCTTATTGTCTCTTTCGTTGGCTTCATTCTCCTCTTCATTATTTCAGTGATGTCGGTTATCAAGCTGCTCAAGTCAAATCGCATTAACCACGCTTCTCCATAA
Predicted protein sequences of Glyma15g22100
>Glyma15g22100.2   sequence type=predicted peptide   gene model=Glyma15g22100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASENGEKVEIGLNAVPQETHKPKKDWVLLSLRMVAFFATASATLVMTFNKQTKSFVVATVGSTPITATLAAKFNQTPAFVFFVIANGNASLHNLVMIVMEVLGPRYDYKGLRLALIAILDMMTMALASAGDGAATFMSELGKNGNSHARWDKICDKFETYCNRGGAALIVSFVGFILLFIISVMSVIKLLKSNRINHASP*






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