SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33680 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:16171847-16174630 REVERSE LENGTH=461 | SoyBase | E_val: 2.00E-69 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
| GO:0010285 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L,L-diaminopimelate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF22 | Panther | AMINOTRANSFERASE | JGI | ISS | |
| UniRef100_G7JTY4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LL-diaminopimelate aminotransferase n=1 Tax=Medicago truncatula RepID=G7JTY4_MEDTR | SoyBase | E_val: 9.00E-80 | ISS |
| UniRef100_I1KL89 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL89_SOYBN | SoyBase | E_val: 3.00E-83 | ISS |
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Glyma15g22090 not represented in the dataset |
Glyma15g22090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g22090.1 sequence type=CDS gene model=Glyma15g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGGTAGACGAAGGTCTGCACACTTGCTGAAGTACCCTGATGCTAAAGTAATAAGCCTTGGAATTGGTGATACAAATAAACCTATTCCTGTAGTCATAACTAATGCAATGTCAAAGTTGAGTGAACATAAGTTTGTTGTGCACTTCGAGAAGTTTTACTGGAAGATGAAGTCATGGCTTGAGCCTTGTAACAAAATTGGGGAACTTGCTTCAACATTTTATAGTGATCTTGGCATAAAACAGGATCATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCAAATGTAAAAATGGTTGTGCAAGACCCTTCATACCCGTTGCTTAAGCACTCATTTATGCTTCAATATGCCAAAAATGGAGAATTTAGTTTTGTTCCTATTGTTAAATATTCAATTGAAATTATGGGCCCGACTGGCCTCTACCAGAAGGATGTTGCCAACTTTGCATACATTGAATACATGAGGTGTAATCTAGAAAATGGTTTCTTCCCTAATTTATGTTCAATTTCTCGACCAGACATAATTTTTTTCTGTTCTCCAAACAATCCTACTGGTTTTGCTAAGGACAATGGTTCAACTTATGCAATGTATATTTCTAGTGACAGCCCATGCTCTATTATTGAAATACCTGGAGCTAAAGAGACTGGTCTCTATTTTGACTCTTTAACAATGACTATGATCTATAGCATTTGGTGGGTTCTT
>Glyma15g22090.1 sequence type=predicted peptide gene model=Glyma15g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IGRRRSAHLLKYPDAKVISLGIGDTNKPIPVVITNAMSKLSEHKFVVHFEKFYWKMKSWLEPCNKIGELASTFYSDLGIKQDHIFVSDGAKCDISRLQIVFGSNVKMVVQDPSYPLLKHSFMLQYAKNGEFSFVPIVKYSIEIMGPTGLYQKDVANFAYIEYMRCNLENGFFPNLCSISRPDIIFFCSPNNPTGFAKDNGSTYAMYISSDSPCSIIEIPGAKETGLYFDSLTMTMIYSIWWVL
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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