SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20410 | AT | Annotation by Michelle Graham. TAIR10: gamma-soluble NSF attachment protein | chr4:11014099-11016454 REVERSE LENGTH=291 | SoyBase | E_val: 4.00E-162 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG1585 | KOG | Protein required for fusion of vesicles in vesicular transport, gamma-SNAP | JGI | ISS | |
| PTHR13768 | Panther | SOLUBLE NSF ATTACMENT PROTEIN (SNAP) | JGI | ISS | |
| PTHR13768:SF2 | Panther | GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN (SNAP) | JGI | ISS | |
| UniRef100_B7FIS3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gamma-soluble NSF attachment protein n=2 Tax=Medicago truncatula RepID=B7FIS3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MHR5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHR5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g21990 not represented in the dataset |
Glyma15g21990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g09940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g191200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g21990.1 sequence type=CDS gene model=Glyma15g21990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCTTCTGATCCCGACAAGTTGATGGTCAAAGCTGATAAACTAACAAGACTCAGTCTCACGAGGTGGAGTGCGGATTGGAAAAGTGCTACTGTTCTTTATGAGCAGGCAGCTAATGGGTTTAGAGTTGCCAAGGACTATGAGAATGCTAAAATAGCATATGAGAAAGCTTCGAAAGGACAAGAAATGCTTTCTTCACCTTGGGATGCGGCTAAGCACATGGAATCCGCTGCTGCTCTCGCAAAGGATCTAAGACACTGGCAAGAAGTTGTGGACTTCTATCGAAAGGCATCTGAATTATATATGGAGTGTGGGAGACCACAACCTGCATCAGATGCTCTTGCAAAGGGAGCCCGTGCTCTGGAAGATAGCATGTCTGAAGAAGCTATTCAGCTATATACAGATGCTTGTACGATTCTCGAAGATGATGGAAGAGAACAAATGGCCTTTGATCTTTATCGTGCTGCCACTAATGTTTATATAAAACTTGAAAAATATACAGATGCAGCATCTTTCATGTTGAGATTGGGCTTTGCAGCTGACAAGTGTAATGCTACCAATAGCCAGTGCAAGGCATATCTTAATGCAATTGTTATCTACCTTTATGCCCATGACTTTAACCAAGCTGAGAAGTGTTATAATGACTGTTCTCAGATTGATGCTTTTCTGAGAAGTGACCAGAATCGTTGTGCTAGCAACCTACTTGCTGCCTACACAGATGGAGATGTTGAAGAAATCAAACGTATTGCTCAGTCAAGTGTTATTTCACATCTTGACCATGTGATCATTAAGCTTGCGAGGAAACTTCCAACAGGCGATGTGAGTTCATTGAAGGCTAACAAGGCTGAAGATGAAGAGGAGCCACTCGATGAAAATGACCTCACTTAA
>Glyma15g21990.1 sequence type=predicted peptide gene model=Glyma15g21990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASDPDKLMVKADKLTRLSLTRWSADWKSATVLYEQAANGFRVAKDYENAKIAYEKASKGQEMLSSPWDAAKHMESAAALAKDLRHWQEVVDFYRKASELYMECGRPQPASDALAKGARALEDSMSEEAIQLYTDACTILEDDGREQMAFDLYRAATNVYIKLEKYTDAASFMLRLGFAADKCNATNSQCKAYLNAIVIYLYAHDFNQAEKCYNDCSQIDAFLRSDQNRCASNLLAAYTDGDVEEIKRIAQSSVISHLDHVIIKLARKLPTGDVSSLKANKAEDEEEPLDENDLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
