SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17390 | AT | Annotation by Michelle Graham. TAIR10: S-adenosylmethionine synthetase family protein | chr3:5952484-5953665 REVERSE LENGTH=393 | SoyBase | E_val: 0 | ISS |
| GO:0006555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine metabolic process | SoyBase | N/A | ISS |
| GO:0006556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: S-adenosylmethionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004478 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methionine adenosyltransferase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1506 | KOG | S-adenosylmethionine synthetase | JGI | ISS | |
| PTHR11964 | Panther | S-ADENOSYLMETHIONINE SYNTHETASE | JGI | ISS | |
| PF00438 | PFAM | S-adenosylmethionine synthetase, N-terminal domain | JGI | ISS | |
| PF02772 | PFAM | S-adenosylmethionine synthetase, central domain | JGI | ISS | |
| PF02773 | PFAM | S-adenosylmethionine synthetase, C-terminal domain | JGI | ISS | |
| UniRef100_I1MHR0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1MHR0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MHR0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1MHR0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g21890 not represented in the dataset |
Glyma15g21890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g190500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g21890.1 sequence type=CDS gene model=Glyma15g21890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCAAGAAACTTTCCTATTCACATCTGAATCAGTGAACGAGGGGCACCCTGACAAGCTCTGTGACCAGATCTCCGATGCTGTGCTCGATGCATGCTTGGAGCAGGACCCTGACAGCAAGGTTGCCTGTGAAACCTGCACCAAGACCAACATGGTGATGGTTTTCGGAGAGATCACAACCAAGGCCAACGTGGACTATGAGAAGATTGTGCGTGACACATGCAGGAACATTGGTTTTGTCTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTCGTCAACATTGAGCAACAGAGTCCTGATATTGCTCAAGGTGTGCACGGCCACCTCACAAAGAGGCCTGAGGAGATTGGTGCTGGTGACCAAGGTCATATGTTCGGCTATGCCACTGACGAGACTCCCGAGCTCATGCCCTTGAGCCATGTCCTTGCCACGAAGCTCGGTGCCAAGCTCACCGAGGTTCGGAAGAACGGGACATGCCCTTGGCTGAGACCTGATGGCAAGACCCAAGTCACTGTTGAGTACTACAATGACAAGGGTGCCATGGTTCCAATCCGCGTCCACACTGTGCTCATCTCCACACAGCATGATGAGACTGTCACAAATGATGAGATTGCAGCTGATCTTAAAGAACACGTGATTAAGCCTGTGATTCCTGAGAAGTACCTTGATGAGAAGACCATTTTCCATTTGAACCCTTCTGGCAGGTTTGTCATTGGAGGGCCGCATGGCGATGCTGGTCTCACCGGCCGCAAGATCATCATCGACACCTATGGAGGATGGGGTGCACATGGTGGTGGTGCCTTCTCTGGGAAGGATCCTACCAAGGTTGATAGGAGTGGTGCCTACATTGTGAGGCAAGCTGCAAAGAGCATTGTTGCAAATGGACTTGCTAGGAGGGCAATTGTGCAAGTTTCCTATGCCATTGGTGTGCCTGAGCCCTTGTCTGTGTTTGTTGACACTTATGGCACTGGGAAGATCCCTGACAAGGAAATCCTCAGCATTGTGAAGGAGAGTTTTGACTTCAGGCCTGGCATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGAAATGGCAGGTTCTTGAAGACTGCTGCATATGGACACTTTGGCAGAGATGACCCTGACTTCACATGGGAAGTGGTGAAGCCACTCAAGGGGGAGAAGGTACCTGCTTAA
>Glyma15g21890.1 sequence type=predicted peptide gene model=Glyma15g21890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRAIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILSIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKGEKVPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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