Glyma15g21490 - SoyBase

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Report for Sequence Feature Glyma15g21490

Feature Type:	gene_model
Chromosome:	Gm15
Start:	19709563
stop:	19712335
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g21490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:17788810-17789635 FORWARD LENGTH=153	SoyBase	E_val: 2.00E-57	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T140	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T140_SOYBN	SoyBase	E_val: 2.00E-106	ISS
UniRef100_Q2QWU1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QWU1_ORYSJ	SoyBase	E_val: 5.00E-55	ISS

Expression Patterns of Glyma15g21490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g21490 not represented in the dataset	Glyma15g21490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g21490

Paralog	Evidence	Comments
Glyma09g09236	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g21490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g188800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g21490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g21490

Limit To All Plant Sequences

>Glyma15g21490.4   sequence type=transcript   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCAAACATACCCTAAAATAAATGATTAAAATAAACTTGACCAGAGACCCTAATAACTATTCTCACTTCTTATTCAATGGTTGCTTCTTCAACCTTTTAAGGGTAAAAGTTGAAACGATTCCTATTTCATAACGAAGAAGATCTTGCCAGTCTCAGAAACAGAGGCGAGTGAGGGTATCAGAATTGGAGAAGAGAGGGGTAGAAGCAAAAATTATATAAGCTTTTGTGCTATCAAATAGCAACAACTACAGCGCATAGAGTTTTGTGTCATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGGTAACTATTATCATGTTTGATAGTTAAAATTTTATTCCTCTAGTTTATGAATTAATTTTCTTTGTTTCTCAGTGTTAAAGACTGGTCTCAACATAATTTTGGCTTGCAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGATTCAGAAACTCATCAGTTTGGGCTATACCAAGTCAAGATTGGGAGGAACATCCTTGTAGTACAGGCCTGGGAGACCTTATACACATCAAACATGCATTATCCCAATGTTTTTACCTAATTTAGCAGCCATAGTGGCTATTGAAGACTTGAAGCATTTTTACCCGACACAAAAACTGTTAACTAATAGCCGTTGTTGCTCGGATCTCTTGTCCATGCTTGGTGCAAACATATGAGATGACTATAGATTTTCCAACTGTTTAGGATTCATAGCGACTTAGAAATTTTCTTATGATTGAACGTTTCGCAATTAATGATGTTGATGCTACATTACTGGAACGAATGCCCCATTTTTCCTTGGATATGCATCAATCTTTTTAAGGTAAGCATTTGGCAACAACCGCTACTCATTGTGATATCAATTTTAAATTAAAGACAAATCATATTGTCTTTCCTACCATGGATTTCCATCATCCCATAAGGTAATGAAAATATGGTCTTTATCACTTTTCTCCAACATTAAGATTCATGAGTGCAATGTTGGCAATCCCAAAAACTCAATTTTAAACCTCAAATTATGCTCTCATTACTGTT

>Glyma15g21490.5   sequence type=transcript   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCAAACATACCCTAAAATAAATGATTAAAATAAACTTGACCAGAGACCCTAATAACTATTCTCACTTCTTATTCAATGGTTGCTTCTTCAACCTTTTAAGGGTAAAAGTTGAAACGATTCCTATTTCATAACGAAGAAGATCTTGCCAGTCTCAGAAACAGAGGCGAGTGAGGGTATCAGAATTGGAGAAGAGAGGGGTAGAAGCAAAAATTATATAAGCTTTTGTGCTATCAAATAGCAACAACTACAGCGCATAGAGTTTTGTGTCATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGTGTTAAAGACTGGTCTCAACATAATTTTGGCTTGCAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGATTCAGAAACTCATCAGTTTGGGCTATACCAAGTCAAGATTGGGAGGAACATCCTTGTAGTACAGGCCTGGGAGACCTTATACACATCAAACATGCATTATCCCAATGTTTTTACCTAATTTAGCAGCCATAGTGGCTATTGAAGACTTGAAGCATTTTTACCCGACACAAAAACTGTTAACTAATAGCCGTTGTTGCTCGGATCTCTTGTCCATGCTTGGTGCAAACATATGAGATGACTATAGATTTTCCAACTGTTTAGGATTCATAGCGACTTAGAAATTTTCTTATGATTGAACGTTTCGCAATTAATGATGTTGATGCTACATTACTGGAACGAATGCCCCATTTTTCCTTGGATATGCATCAATCTTTTTAAGGTAAGCATTTGGCAACAACCGCTACTCATTGTGATATCAATTTTAAATTAAAGACAAATCATATTGTCTTTCCTACCATGGATTTCCATCATCCCATAAGGTAATGAAAATATGGTCTTTATCACTTTTCTCCAACATTAAGA

>Glyma15g21490.6   sequence type=transcript   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCAAACATACCCTAAAATAAATGATTAAAATAAACTTGACCAGAGACCCTAATAACTATTCTCACTTCTTATTCAATGGTTGCTTCTTCAACCTTTTAAGGGTAAAAGTTGAAACGATTCCTATTTCATAACGAAGAAGATCTTGCCAGTCTCAGAAACAGAGGCGAGTGAGGGTATCAGAATTGGAGAAGAGAGGGGTAGAAGCAAAAATTATATAAGCTTTTGTGCTATCAAATAGCAACAACTACAGCGCATAGAGGGTTTTGCAGTTTTGTGTCATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGTGTTAAAGACTGGTCTCAACATAATTTTGGCTTGCAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGATTCAGAAACTCATCAGTTTGGGCTATACCAAGTCAAGATTGGGAGGAACATCCTTGTAGTACAGGCCTGGGAGACCTTATACACATCAAACATGCATTATCCCAATGTTTTTACCTAATTTAGCAGCCATAGTGGCTATTGAAGACTTGAAGCATTTTTACCCGACACAAAAACTGTTAACTAATAGCCGTTGTTGCTCGGATCTCTTGTCCATGCTTGGTGCAAACATATGAGATGACTATAGATTTTCCAACTGTTTAGGATTCATAGCGACTTAGAAATTTTCTTATGATTGAACGTTTCGCAATTAATGATGTTGATGCTACATTACTGGAACGAATGCCCCATTTTTCCTTGGATATGCATCAATCTTTTTAAGGTAAGCATTTGGCAACAACCGCTACTCATTGTGATATCAATTTTAAATTAAAGACAAATCATATTGTCTTTCCTACCATGGATTTCCATCATCCCATAAGGTAATGAAAATATGGTCTTTATCACTTTTCTCCAACATTAAGA

Coding sequences of Glyma15g21490

Limit To All Plant Sequences

>Glyma15g21490.3   sequence type=CDS   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGA

>Glyma15g21490.4   sequence type=CDS   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGGTAACTATTATCATGTTTGA

>Glyma15g21490.5   sequence type=CDS   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGTGTTAAAGACTGGTCTCAACATAATTTTGGCTTGCAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGATTCAGAAACTCATCAGTTTGGGCTATACCAAGTCAAGATTGGGAGGAACATCCTTGTAG

>Glyma15g21490.6   sequence type=CDS   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGATTCTGAAGGATTGGAGAATGGGATTGAAGAGTTGAAATTGAAGGAAGAGAAGGGTAATGCACATGCACAGCCACAGGGTCAATTGCAGATCACTACCTTTTCTGAACTCGTCAATGATGTTAACCTCCATTTTCAAATCATTCGCTTTCCCAAACAGATATATGTTTGGATTGGTTACAACTCTGCAAAATTGGGACACATGTATGCAGCAGCTTCTACTCGTCCTAACAATATGGTATCTGTCACTTCCATACTTGGAGGGGTTTCTGATAATACAGGGTCTGGCATTGCTCATCGATTAGTGTTAAAGACTGGTCTCAACATAATTTTGGCTTGCAGTATTCCAAAAAATAGCCCCATTCTTGAGACAGAAGCTGAGAAAATATTGATTCAGAAACTCATCAGTTTGGGCTATACCAAGTCAAGATTGGGAGGAACATCCTTGTAG

Predicted protein sequences of Glyma15g21490

Limit To All Plant Sequences

>Glyma15g21490.3   sequence type=predicted peptide   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMDSEGLENGIEELKLKEEKGNAHAQPQGQLQITTFSELVNDVNLHFQIIRFPKQIYVWIGYNSAKLGHMYAAASTRPNNMVSVTSILGGVSDNTGSGIAHRLVFQKIAPFLRQKLRKY*

>Glyma15g21490.4   sequence type=predicted peptide   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMDSEGLENGIEELKLKEEKGNAHAQPQGQLQITTFSELVNDVNLHFQIIRFPKQIYVWIGYNSAKLGHMYAAASTRPNNMVSVTSILGGVSDNTGSGIAHRLGNYYHV*

>Glyma15g21490.5   sequence type=predicted peptide   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMDSEGLENGIEELKLKEEKGNAHAQPQGQLQITTFSELVNDVNLHFQIIRFPKQIYVWIGYNSAKLGHMYAAASTRPNNMVSVTSILGGVSDNTGSGIAHRLVLKTGLNIILACSIPKNSPILETEAEKILIQKLISLGYTKSRLGGTSL*

>Glyma15g21490.6   sequence type=predicted peptide   gene model=Glyma15g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMDSEGLENGIEELKLKEEKGNAHAQPQGQLQITTFSELVNDVNLHFQIIRFPKQIYVWIGYNSAKLGHMYAAASTRPNNMVSVTSILGGVSDNTGSGIAHRLVLKTGLNIILACSIPKNSPILETEAEKILIQKLISLGYTKSRLGGTSL*

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