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Report for Sequence Feature Glyma15g21427

Feature Type:gene_model
Chromosome:Gm15
Start:19680732
stop:19681090
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g21427
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21980AT Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:11655913-11656809 FORWARD LENGTH=122 SoyBaseE_val: 2.00E-32ISS
GO:0006914GO-bp Annotation by Michelle Graham. GO Biological Process: autophagy SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005775GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar lumen SoyBaseN/AISS
GO:0005776GO-cc Annotation by Michelle Graham. GO Cellular Compartment: autophagic vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0019776GO-mf Annotation by Michelle Graham. GO Molecular Function: Atg8 ligase activity SoyBaseN/AISS
GO:0019779GO-mf Annotation by Michelle Graham. GO Molecular Function: APG8 activating enzyme activity SoyBaseN/AISS
GO:0019786GO-mf Annotation by Michelle Graham. GO Molecular Function: APG8-specific protease activity SoyBaseN/AISS
PTHR10969Panther MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED JGI ISS
PTHR10969:SF17Panther AUTOPHAGY-RELATED PROTEIN 8 JGI ISS
PF02991PFAM Microtubule associated protein 1A/1B, light chain 3 JGI ISS
UniRef100_I1MHP4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHP4_SOYBN SoyBaseE_val: 5.00E-44ISS
UniRef100_Q6W5F3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein 1 light chain 3 n=1 Tax=Gossypium hirsutum RepID=Q6W5F3_GOSHI SoyBaseE_val: 8.00E-31ISS

Expression Patterns of Glyma15g21427
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g21427 not represented in the dataset
Glyma15g21427 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g21427 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g188600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g21427
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g21427
>Glyma15g21427.1   sequence type=CDS   gene model=Glyma15g21427   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACCTTGTCCTTACTGATTTGATTGTTGACCAGTCTGTTTATGTTGTCCACAAAAGGATTAAGCTCAGTGTAGAGAAGGCTATTTTTATTTTCATCAAAAACACACTACCTCCAATTGGTAATGCATTGATGTCTGCTATTTATGAAGAAAATAAGGATCAAGATGGCTTTCTTTACATGACTTACAATGGAGAGAACACCTTCGGATCCCACTAG
Predicted protein sequences of Glyma15g21427
>Glyma15g21427.1   sequence type=predicted peptide   gene model=Glyma15g21427   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YLVLTDLIVDQSVYVVHKRIKLSVEKAIFIFIKNTLPPIGNALMSAIYEENKDQDGFLYMTYNGENTFGSH*






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