Glyma15g21410 - SoyBase

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Report for Sequence Feature Glyma15g21410

Feature Type:	gene_model
Chromosome:	Gm15
Start:	19656960
stop:	19661368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g21410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06483	AT	Annotation by Michelle Graham. TAIR10: pyruvate dehydrogenase kinase \| chr3:1990727-1992581 REVERSE LENGTH=366	SoyBase	E_val: 0	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009927	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG0787	KOG	Dehydrogenase kinase	JGI		ISS
PTHR11947	Panther	PYRUVATE DEHYDROGENASE KINASE	JGI		ISS
PTHR11947:SF3	Panther	PYRUVATE DEHYDROGENASE KINASE	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
PF10436	PFAM	Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase	JGI		ISS
UniRef100_Q6PP98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Mitochondrial pyruvate dehydrogenase kinase isoform 2 n=1 Tax=Glycine max RepID=Q6PP98_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6PP98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial pyruvate dehydrogenase kinase isoform 2 n=1 Tax=Glycine max RepID=Q6PP98_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g21410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g21410

Paralog	Evidence	Comments
Glyma09g09270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g21410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g188500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g21410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g21410

Limit To All Plant Sequences

>Glyma15g21410.3   sequence type=transcript   gene model=Glyma15g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACGTGTCACAAACGTATCCCCCAATAAATCAGCATTGGCAGGTCTCAAAATCATCAATCCATCCGTCACCTAGTAACCAGGTTCTGCAAATTTCGCCACTTGCAGATGAAAAGTTCTAAACTTTCCCCTGGTTAAATCCTAACCCCAGTTTTCTTCCTCTCACTTTAAGCACTCCCCAATTTGACAATTTTCCCCTCTCTCCTCAAAAGGGGTGTGAGCCACTTTCTCTCTCCTCAATTGGGGTGTGAAAGTTTCTACCTTTTTTCCTTTCTATTTTTCCATTATCTATGTTAGTTTTGCATTGTGTGTTGTTTGGCTTGCAATCTTGTTGCATGCTGGTTGTTGGTGTTGGTGTCCCAATTCACTCTCAAATTTCAGGGTTCTTAGAACTAGTAGGACCTTGCGACCATGGCTGCCAAAAAGGCATGTGAGACATTCTCAAAGTCCTTGATTGAGGAAGTGCATAGATGGGGTTGCTTGAAGCAGACAGGGGTAAGTCTCAGGTACATGATGGAATTCGGGTCCAAACCCACTGACAAAAATTTGTTGATCTCTGCTCAGTTTCTTCACAAGGAACTTGCCATTAGAATTGCCAGAAGGGCCATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCAAAAACCTGCTGTTTTAAAGGTTAGGGATTGGTATGTGGATTCTTTCCGTGATCTCAGAGCCTTCCCCAACATCAAGAATGTGAATGATGAACAAGATTTCACTGAAATGATCAAGGCCATCAAAGTGAGGCACAACAATGTGGTACCCACAATGGCCTTGGGTGTTCAGCAATTGAAGAAACGTATGGATCCAAAGATTGTTTATGAAGATCTTGTTGAGATTCATCAGTTTCTAGACCGCTTCTACATGTCAAGGATTGGAATCCGTATGCTTATCGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCCATGTTGTGGGCTATATACATACAAAAATGTCTCCTGTGGAGGTAGCAAGGAATGCCAGTGAGGATGCACGTGCTATATGTTGTCGCGAATATGGAAGTGCCCCTGATGTGCATATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCACTGCGTGCCGTACAAGAGCGTTTTATGGATTCTGATAAAGTTGCACCTCCCATTAGAATAATAGTTGCTGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATTGCAAGAAGTGGGTTGCCTAAAATTTTTACATATCTATATAGTACTGCGAGAAACCCATTGGATGAGCATTCGGATCTTGGAATAGGTGATAATGTGACAATGGCTGGATATGGATATGGTCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGCACTGATGCATATCTCCATTTGTCTCGTTTGGGAGATTCACAAGAACCTTTGCCCTGAAAGTACTTTTCAGTCAGAGTTACCTTAAGTAACTCACTAACATTGTGCTAAGGAAAACACTTGTTAGAATAAAAAAGTACTATTTGCTGTCAATTTTTACATTCTAATAATTTGACAGATTTCCTGTAAATATGTGGTACATAAGATTGTGCATGGTGATGCCCCCCTTCTTTGCCTTCAGATCCAGCTTTGGGAATTTGTCCTTTTTATCTTCTGAAAAAAAATGAATATGCTCTTTTATCCTATAGTATTGATGCATATGGGGGATTAAAGGTGGAGATATTCCACATGATTTTAAAATAAACAAGGTCATGCTACTGTGACTTAGCATGTGCCTTTTATTGAGTTGGGGACCAATTTTGTGTGGTTCAGCAGCAATCCAAATAAATTGCATCTAGGTCCCTCTTCAGGATCAATTTGTCACTATAACTTGTCTTCTTCCATTTACAATTTGGGCAAACATGGTCACCATTCCAACATCAGCAGGGTTATTTATTACTATGATAGCATTTGATAACAAGTGACTGTAAAATGGGCTTTTGCAAACCAAATGCATCTTAAGCAATCATCTTAATGCCTCTTTGTT

Coding sequences of Glyma15g21410

Limit To All Plant Sequences

>Glyma15g21410.1   sequence type=CDS   gene model=Glyma15g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAAAAAGGCATGTGAGACATTCTCAAAGTCCTTGATTGAGGAAGTGCATAGATGGGGTTGCTTGAAGCAGACAGGGGTAAGTCTCAGGTACATGATGGAATTCGGGTCCAAACCCACTGACAAAAATTTGTTGATCTCTGCTCAGTTTCTTCACAAGGAACTTGCCATTAGAATTGCCAGAAGGGCCATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCAAAAACCTGCTGTTTTAAAGGTTAGGGATTGGTATGTGGATTCTTTCCGTGATCTCAGAGCCTTCCCCAACATCAAGAATGTGAATGATGAACAAGATTTCACTGAAATGATCAAGGCCATCAAAGTGAGGCACAACAATGTGGTACCCACAATGGCCTTGGGTGTTCAGCAATTGAAGAAACGTATGGATCCAAAGATTGTTTATGAAGATCTTGTTGAGATTCATCAGTTTCTAGACCGCTTCTACATGTCAAGGATTGGAATCCGTATGCTTATCGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCCATGTTGTGGGCTATATACATACAAAAATGTCTCCTGTGGAGGTAGCAAGGAATGCCAGTGAGGATGCACGTGCTATATGTTGTCGCGAATATGGAAGTGCCCCTGATGTGCATATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCACTGCGTGCCGTACAAGAGCGTTTTATGGATTCTGATAAAGTTGCACCTCCCATTAGAATAATAGTTGCTGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATTGCAAGAAGTGGGTTGCCTAAAATTTTTACATATCTATATAGTACTGCGAGAAACCCATTGGATGAGCATTCGGATCTTGGAATAGGTGATAATGTGACAATGGCTGGATATGGATATGGTCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGCACTGATGCATATCTCCATTTGTCTCGTTTGGGAGATTCACAAGAACCTTTGCCCTGA

>Glyma15g21410.3   sequence type=CDS   gene model=Glyma15g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAAAAAGGCATGTGAGACATTCTCAAAGTCCTTGATTGAGGAAGTGCATAGATGGGGTTGCTTGAAGCAGACAGGGGTAAGTCTCAGGTACATGATGGAATTCGGGTCCAAACCCACTGACAAAAATTTGTTGATCTCTGCTCAGTTTCTTCACAAGGAACTTGCCATTAGAATTGCCAGAAGGGCCATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCAAAAACCTGCTGTTTTAAAGGTTAGGGATTGGTATGTGGATTCTTTCCGTGATCTCAGAGCCTTCCCCAACATCAAGAATGTGAATGATGAACAAGATTTCACTGAAATGATCAAGGCCATCAAAGTGAGGCACAACAATGTGGTACCCACAATGGCCTTGGGTGTTCAGCAATTGAAGAAACGTATGGATCCAAAGATTGTTTATGAAGATCTTGTTGAGATTCATCAGTTTCTAGACCGCTTCTACATGTCAAGGATTGGAATCCGTATGCTTATCGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCCATGTTGTGGGCTATATACATACAAAAATGTCTCCTGTGGAGGTAGCAAGGAATGCCAGTGAGGATGCACGTGCTATATGTTGTCGCGAATATGGAAGTGCCCCTGATGTGCATATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCACTGCGTGCCGTACAAGAGCGTTTTATGGATTCTGATAAAGTTGCACCTCCCATTAGAATAATAGTTGCTGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATTGCAAGAAGTGGGTTGCCTAAAATTTTTACATATCTATATAGTACTGCGAGAAACCCATTGGATGAGCATTCGGATCTTGGAATAGGTGATAATGTGACAATGGCTGGATATGGATATGGTCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGCACTGATGCATATCTCCATTTGTCTCGTTTGGGAGATTCACAAGAACCTTTGCCCTGA

Predicted protein sequences of Glyma15g21410

Limit To All Plant Sequences

>Glyma15g21410.1   sequence type=predicted peptide   gene model=Glyma15g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKKACETFSKSLIEEVHRWGCLKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELAIRIARRAIELENLPYGLSQKPAVLKVRDWYVDSFRDLRAFPNIKNVNDEQDFTEMIKAIKVRHNNVVPTMALGVQQLKKRMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHVVGYIHTKMSPVEVARNASEDARAICCREYGSAPDVHIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPKIFTYLYSTARNPLDEHSDLGIGDNVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*

>Glyma15g21410.3   sequence type=predicted peptide   gene model=Glyma15g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKKACETFSKSLIEEVHRWGCLKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELAIRIARRAIELENLPYGLSQKPAVLKVRDWYVDSFRDLRAFPNIKNVNDEQDFTEMIKAIKVRHNNVVPTMALGVQQLKKRMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHVVGYIHTKMSPVEVARNASEDARAICCREYGSAPDVHIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPKIFTYLYSTARNPLDEHSDLGIGDNVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*

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