Glyma15g21240 - SoyBase

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Report for Sequence Feature Glyma15g21240

Feature Type:	gene_model
Chromosome:	Gm15
Start:	19470252
stop:	19482280
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g21240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48960	AT	Annotation by Michelle Graham. TAIR10: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase \| chr5:19849645-19853382 FORWARD LENGTH=642	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0008253	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 5'-nucleotidase activity	SoyBase	N/A	ISS
KOG2469	KOG	IMP-GMP specific 5'-nucleotidase	JGI		ISS
PTHR12103	Panther	CYTOSOLIC PURINE 5-NUCLEOTIDASE-RELATED	JGI		ISS
PTHR12103:SF1	Panther	UNCHARACTERIZED	JGI		ISS
PF05761	PFAM	5' nucleotidase family	JGI		ISS
UniRef100_G7JR10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytosolic purine 5'-nucleotidase n=1 Tax=Medicago truncatula RepID=G7JR10_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BBB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BBB7 related cluster n=1 Tax=unknown RepID=UPI000233BBB7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g21240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g21240

Paralog	Evidence	Comments
Glyma09g09341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g21240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g187000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g21240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g21240

Limit To All Plant Sequences

>Glyma15g21240.1   sequence type=CDS   gene model=Glyma15g21240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTAAGAGGAATTGATGTACATGCTGCATTTGAAGGTCCAGTTGAGGAGGCCAGAACAGAGGCTAGAAAAGCTGAAGATTTACTGAAAAAATTGGATATTCCGAGTCCTTCGTTGAGAAATTCACCTCGTGGAATATTCTGCACCCGAACGCTGAATCTAAGGTCAATTAGTGCTATTGGATATGACATGGACTATACCTTGGTGCATTATAATGTGAAGGCTTGGGAAGGGCGTGCTTATGACTACTGTATGGAAAACCTCAAGAATATGGGTTTCCCTATTGATGGACTTGCGTTTGATCCAGACCTGGTTATCAGAGGTCTTGTGATAGATAAAGAGGGAGGCAATTTGGTTAAAGCTGATCGATTTGGTTATATAAAAAGAGCCATGCATGGAACCAAAATGCTATCTACGCGTGCTGTGAGTGAGATCTATGGGAGAGAACTGGTGGACCTGCGGCAAAAGAGTCGATGGGAGTTTCTCAACACATTCTTCTCTGTGTCCGAAGCTGTGGCTTACATGCAGATGGTTGACAAACTTGATGGTGGGATTATACCATCCAATCTTGGCTCCTTTGATTATAAAGGGCTTTATAAGGTTGTTGGAAAAGCTCTCATCGCGGCACACGTAGAAGGCCGCCTCAAGAGTGAGATTATGTCTAACCCTGAACAGTTTGTGGAGCCTGATCCGGAATTACTCTTCACACTTTTGGATCAGAAAGAGGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTTGGAGAGATTTATTTGACATTGTAATTGTCTCGGCAAACAAACCAGAATTCTTCCAAATGTCACACCCCATGTATGAGGTGGTGACAGAAGAGGGCCTGATGCGTCCATGCTTTAAGGCTCAAACTGGTGGTTTGTACTCAGGGGGGAGTGCGCAGATGGTTGAAAGTTCCCTAAATATACATGGAGATGAGATACTGTATATTGGAGACCATATTTACACTGATGTTAGTCAACCCAAAGTCCATTTGCGATGGCGAGCAGCATTGATTTGTCGGGAACTGGAAGAAGAATACACTGCCCTAATTCGTAGCCGGGGTCGTAGACAATCATTGGTAGAGCTTATCAATCAAAAGGAGGTTGTTGTTGATCTCTTTAACCAACTGCGGCTGGCTCTGCAGAGGCAAAGTAAAGGGCGTCCAGCCCAAATTGTTGCTGCAACTAATGTGAACAAAGAAAATCTTACTGAACGCATGCAAAAGTTACTTCTTGTTATGCAAATACTAGATGGAAAAATTGCTCCAATGCTAGAGGCAGATGGGGAGCTCTTTAATAAAAAGTGGGGCTATCTATCGCGTGCTGGTTTGTGGGATAAAAGCCACTTGATGCGACAAATTGAGAAGTATGCAGATATATATACCTCTAGAGTGTCAAATTTTTTATATTACACACCGTTTATGTATTTTGGCTCTCAGGAACAGAACCTTGCACATGATTCATACACACACTATTGTTCTCAAATTGACAATTTTCCTTCCTATGGACAATTGGACCAACATGGTGGAGAAATACAAGAAACAAATGTATCTTGTTGA

Predicted protein sequences of Glyma15g21240

Limit To All Plant Sequences

>Glyma15g21240.1   sequence type=predicted peptide   gene model=Glyma15g21240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRGIDVHAAFEGPVEEARTEARKAEDLLKKLDIPSPSLRNSPRGIFCTRTLNLRSISAIGYDMDYTLVHYNVKAWEGRAYDYCMENLKNMGFPIDGLAFDPDLVIRGLVIDKEGGNLVKADRFGYIKRAMHGTKMLSTRAVSEIYGRELVDLRQKSRWEFLNTFFSVSEAVAYMQMVDKLDGGIIPSNLGSFDYKGLYKVVGKALIAAHVEGRLKSEIMSNPEQFVEPDPELLFTLLDQKEAGKKLVLITNSDYHYTHKMMHHSFNRFLPNDMGWRDLFDIVIVSANKPEFFQMSHPMYEVVTEEGLMRPCFKAQTGGLYSGGSAQMVESSLNIHGDEILYIGDHIYTDVSQPKVHLRWRAALICRELEEEYTALIRSRGRRQSLVELINQKEVVVDLFNQLRLALQRQSKGRPAQIVAATNVNKENLTERMQKLLLVMQILDGKIAPMLEADGELFNKKWGYLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLYYTPFMYFGSQEQNLAHDSYTHYCSQIDNFPSYGQLDQHGGEIQETNVSC*

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