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Report for Sequence Feature Glyma15g21180

Feature Type:gene_model
Chromosome:Gm15
Start:19404336
stop:19405785
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19940AT Annotation by Michelle Graham. TAIR10: oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding | chr2:8613168-8615649 FORWARD LENGTH=401 SoyBaseE_val: 4.00E-67ISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0006526GO-bp Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003942GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyl-gamma-glutamyl-phosphate reductase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016620GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
GO:0051287GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD binding SoyBaseN/AISS
PTHR14097Panther TIP30 SER/THR KINASE-RELATED JGI ISS
PTHR14097:SF7Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_I1ND31UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Glycine max RepID=I1ND31_SOYBN SoyBaseE_val: 1.00E-86ISS
UniRef100_I1ND31UniRef Annotation by Michelle Graham. Best UniRef hit: N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Glycine max RepID=I1ND31_SOYBN SoyBaseE_val: 1.00E-86ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g21180 not represented in the dataset

Glyma15g21180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g21180.1   sequence type=CDS   gene model=Glyma15g21180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAGCTATATACGGATTGACAGAGGTTTTAACAGAGGAAATAAAGAATGCACGTCTAGTTGCTAATCCTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTCATAAAGGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGAGTGGAGCAGGACGTAGTGCCAAAGAAAATTTATTGTTCACTGAAGTAACTGAAGGTCTCAATTCTTATGTCAATTTATGGTTTATCTTGATTCATGGTTTATTGCTTTATCATGCCTGTTTCATAGGGCTGTGGAATGATGAAGAATTTGTTGTTATGTTGGAAAATGGAGCCATTCCTCAAACTCATAGTGTTAAAAGGACTAATTACGGTTTAATCAATGTTTTTCTAGATCAAATTCCTGGAAGAGCAATCATTATATCTGTTATTGATAATTTAGTGAAGGGAGCTTCAGGTCAAGCTTTACAAAACCTTAATTTGTTAATGGGATTTCCAAAAAATTTGGGACTTCATTACCTGCCTCTTTTTCCT

>Glyma15g21180.1   sequence type=predicted peptide   gene model=Glyma15g21180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KKAIYGLTEVLTEEIKNARLVANPGCYPTSVQLPLVPFIKASLIELKNIIIDAKSGVSGAGRSAKENLLFTEVTEGLNSYVNLWFILIHGLLLYHACFIGLWNDEEFVVMLENGAIPQTHSVKRTNYGLINVFLDQIPGRAIIISVIDNLVKGASGQALQNLNLLMGFPKNLGLHYLPLFP







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