Glyma15g21150 - SoyBase

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Report for Sequence Feature Glyma15g21150

Feature Type:	gene_model
Chromosome:	Gm15
Start:	19361333
stop:	19362588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g21150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36360	AT	Annotation by Michelle Graham. TAIR10: beta-galactosidase 3 \| chr4:17176840-17181143 REVERSE LENGTH=856	SoyBase	E_val: 3.00E-24	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005990	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019513	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase	SoyBase	N/A	ISS
GO:0019515	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF33	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01301	PFAM	Glycosyl hydrolases family 35	JGI		ISS
UniRef100_I1JCK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Glycine max RepID=I1JCK7_SOYBN	SoyBase	E_val: 2.00E-30	ISS
UniRef100_I1JCK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-galactosidase n=1 Tax=Glycine max RepID=I1JCK7_SOYBN	SoyBase	E_val: 2.00E-30	ISS

Expression Patterns of Glyma15g21150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g21150 not represented in the dataset	Glyma15g21150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g21150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g21150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g21150

Limit To All Plant Sequences

>Glyma15g21150.1   sequence type=CDS   gene model=Glyma15g21150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTCTCTCCAAATGGGTCGACGCCAAGCCTGAAAAACCTAGTATGCCTCTTCTCTTTTTTCATTATTTTCATATTAATGTGGAAGTTCATTGTCATTTTGAACCTTTCTGTGATGTTTAATTCCTTTGTTTTTTTCTCTCTCCATGAAATGGAACATGCACTGGATTTTGATTTGCATGAACTTATTGACAAACTGGCTATTGAGAATGAATATGGGGCACAGAGTAAGTTGCAAGGAGCTACTGGTCAAAACTATGTGAATTGGGCTGCAAAACTGGCTGTGGAAATGGGAACTGGGGTCCCTTGGGTGATGTGCAAGGAAGACAATGCCCCATATCTAGTGATAAACACTTGCACTGGCTTCTATTGTGATAAATTTGTTTCTTCTGCTGTTGATATTAAAAATCATGAAATTTTCTTCACATCAATTGATTCCATATTTGCTTCTTACCATGCAATAGGATTCACTAATGGAAGTAAGATATATGTTGGGACAGAAAATGTTTCAAGCTTAAATTCCTTCGTGCATATAATACACACAATTCTTTAA

Predicted protein sequences of Glyma15g21150

Limit To All Plant Sequences

>Glyma15g21150.1   sequence type=predicted peptide   gene model=Glyma15g21150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LLSPNGSTPSLKNLVCLFSFFIIFILMWKFIVILNLSVMFNSFVFFSLHEMEHALDFDLHELIDKLAIENEYGAQSKLQGATGQNYVNWAAKLAVEMGTGVPWVMCKEDNAPYLVINTCTGFYCDKFVSSAVDIKNHEIFFTSIDSIFASYHAIGFTNGSKIYVGTENVSSLNSFVHIIHTIL*

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