Glyma15g20990 - SoyBase

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Report for Sequence Feature Glyma15g20990

Feature Type:	gene_model
Chromosome:	Gm15
Start:	19180353
stop:	19185976
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04450	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:2218379-2221113 FORWARD LENGTH=528	SoyBase	E_val: 7.00E-64	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7IQG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IQG1_MEDTR	SoyBase	E_val: 3.00E-111	ISS
UniRef100_I1MHN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHN1_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma15g20990

Locus	Gene Symbol	Protein Name
	WRKY152	WRKY Transcription Factor

Expression Patterns of Glyma15g20990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g20990

Paralog	Evidence	Comments
Glyma09g09400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g20990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g186300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20990

Limit To All Plant Sequences

>Glyma15g20990.1   sequence type=CDS   gene model=Glyma15g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATAAAGCTGCGATAAAAGAATTGCTGGAAGACGAGGAAAACCCATATGATAATACTATGGGATCTACTCTTCTAAGCTTGAGCCTGAATAACTCAGGGCAACCCCTTAACCAAATGGGGATGCTGCGAATCAAGCTTGAGGAAGCAAAGAAAGAGAATGAGATTTTGAAGGCTATGCTGAATCAGGTTAATCAACACTGCACTGCTCTTCAGAATCGCATACTTTTTGAGATGCAGCAGCATCAACTATTTTCATCATCACCTCGCAATGATAATAATAATCATGACTTGCAGGGAAACAAACAAGATGCGGAGAAATTACCAATGCTACACACCCGGCAGTTTTTGAATATGGGCGAGTCTTCATCAATTTTAGACGGCAACACAAAAGCATGTGCAATAGCAGAAAACGCTGAAAAGAAAATGTTAGGCAAAAACCTTGCATGTGATGATAATAAGTACAATGTTGAAGGTGAAATCAACAGTCAAATAACATCGCATGAAGCAAAAAGCACAGAAGATCAAGTATCTGAGGTTACTTGCAGGAGAGCTAGAGTGTCCATAAGAGCAAGATCAGATTTTTCTTCGATGTTTGATGGGTGTCAATGGAGAAAGTACGGACAAAAGACAGCGAAAGGCAACCCTTGTCCTCGAGCCTACTACCGTTGTAGCATGGGAACTGCATGTCCGGTTCGTAAGCAGGTGCAAAGGTGTTTCAAGGATGAGACTGTTCTCATCACAACCTATGAAGGGAACCACAACCATCCCCTCCCACCAGCAGCAAGACCTTTGGCAAGCTCAACATCAGCCGCATTGAACATGTTCCTTTCTGGCTCAATCACAAGCTCACATTCCAGCACCATTCTACCTAACTCACCCCTATCCACTATTTCCCCAAGTACTGCTGTGGCCACTTTCTCCCAAAATGCAACATGCCCCACAGTAACACTGGACTTAACCCAGCCAAATAACAACAACTATCTCCAATTCCAAAGTGCCACCACTTCTTCACAAGACCATACACAATCATTTTTCCCTCTGCCATTGCATGGAAACCCTCAAAATTATTCTGAGGGGTTGATGCACTTGTGGTCTAAGGTTCCAATTCCAACCATGTTAGCCCCAGAGAAAAACCTTGCCCTGGTGGATGTTGTCAGTGAGGCCATAAACAAAGATCCTTCTCTCAAGGCAGCATTGTTTTCAGCCATTTCCTCACTCACTGGAGATCCTGATCAGAAGGACAACATCAATAACATAAGCCAATTACATAGTAAGAGTAGTGGTGGTTATGACCCTTGTTCTAAGATGCCTGCAATACCACCTATTCAGCCTTACACTAAGTTGATTTAG

Predicted protein sequences of Glyma15g20990

Limit To All Plant Sequences

>Glyma15g20990.1   sequence type=predicted peptide   gene model=Glyma15g20990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDKAAIKELLEDEENPYDNTMGSTLLSLSLNNSGQPLNQMGMLRIKLEEAKKENEILKAMLNQVNQHCTALQNRILFEMQQHQLFSSSPRNDNNNHDLQGNKQDAEKLPMLHTRQFLNMGESSSILDGNTKACAIAENAEKKMLGKNLACDDNKYNVEGEINSQITSHEAKSTEDQVSEVTCRRARVSIRARSDFSSMFDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPLASSTSAALNMFLSGSITSSHSSTILPNSPLSTISPSTAVATFSQNATCPTVTLDLTQPNNNNYLQFQSATTSSQDHTQSFFPLPLHGNPQNYSEGLMHLWSKVPIPTMLAPEKNLALVDVVSEAINKDPSLKAALFSAISSLTGDPDQKDNINNISQLHSKSSGGYDPCSKMPAIPPIQPYTKLI*

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