SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G28050 | AT | Annotation by Michelle Graham. TAIR10: Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045755 REVERSE LENGTH=185 | SoyBase | E_val: 2.00E-105 | ISS |
| GO:0009061 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaerobic respiration | SoyBase | N/A | ISS |
| GO:0009218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0019690 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion | SoyBase | N/A | ISS |
| GO:0019692 | GO-bp | Annotation by Michelle Graham. GO Biological Process: deoxyribose phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1018 | KOG | Cytosine deaminase FCY1 and related enzymes | JGI | ISS | |
| PTHR11079 | Panther | CYTOSINE DEAMINASE | JGI | ISS | |
| PTHR11079:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00383 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| UniRef100_C6SVB4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVB4_SOYBN | SoyBase | E_val: 4.00E-133 | ISS |
| UniRef100_G7IQF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytidine deaminase n=1 Tax=Medicago truncatula RepID=G7IQF5_MEDTR | SoyBase | E_val: 8.00E-112 | ISS |
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Glyma15g20970 not represented in the dataset |
Glyma15g20970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g09430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g186100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g20970.2 sequence type=transcript gene model=Glyma15g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAATCTTTTCTATTTCACTCCCTCTAATTTTCCTCTCTCTCCCAATGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAACATTGCTGAAGAAGTTTTTGAGAGAACCAAGGAAAAATTCCGAATGTATTAATTGAATCTCCATGTTTCCTAAGCCGTTAGGTATTTACACCTGATGAAATCTGAGTTCACATAAATAAGCTCATTGCTCTCGTGTATCCTAAATCCTAATGAATAAATTGTATGGGGAGAAGAGAATCAAAGTGAAATTTACTTTGTGATATTTGATGTCATTCTCATGTTAAATCCTTGTAATGATCGTAAATATTGAATGGGGTTTTATATTTTAAGACATTAAATTTATTAAAGTTTTCATTTAATATCTTTTTAAGAGGATTTATATGAATTTGTAAGTGGATACACTATTAACTTTTATACGCATATGATGCTAAAGAATATCCT
>Glyma15g20970.1 sequence type=CDS gene model=Glyma15g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGTTAATGTGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAACATTGCTGAAGAAGTTTTTGAGAGAACCAAGGAAAAATTCCGAATGTATTAA >Glyma15g20970.2 sequence type=CDS gene model=Glyma15g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCAAACCAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAACATTGCTGAAGAAGTTTTTGAGAGAACCAAGGAAAAATTCCGAATGTATTAA
>Glyma15g20970.1 sequence type=predicted peptide gene model=Glyma15g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEVNVVQTKNGTVAVASAFAGHKEAIQQRDHKFLRIAVEEAYKGVDCEDGGPFGAIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADGKAANIAEEVFERTKEKFRMY* >Glyma15g20970.2 sequence type=predicted peptide gene model=Glyma15g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQTKNGTVAVASAFAGHKEAIQQRDHKFLRIAVEEAYKGVDCEDGGPFGAIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADGKAANIAEEVFERTKEKFRMY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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