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Report for Sequence Feature Glyma15g20825

Feature Type:gene_model
Chromosome:Gm15
Start:18761079
stop:18762397
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g20825
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43310AT Annotation by Michelle Graham. TAIR10: COP1-interacting protein-related | chr5:17379883-17385387 REVERSE LENGTH=1164 SoyBaseE_val: 3.00E-46ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
UniRef100_G7I4V2UniRef Annotation by Michelle Graham. Most informative UniRef hit: COP1-interacting protein n=1 Tax=Medicago truncatula RepID=G7I4V2_MEDTR SoyBaseE_val: 2.00E-72ISS
UniRef100_UPI000233D4DCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D4DC related cluster n=1 Tax=unknown RepID=UPI000233D4DC SoyBaseE_val: 6.00E-90ISS

Expression Patterns of Glyma15g20825
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g20825 not represented in the dataset
Glyma15g20825 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20825 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g20825
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g20825
>Glyma15g20825.1   sequence type=CDS   gene model=Glyma15g20825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGGCAGGAAGACTTGGGAGGATACTAATGAGGAGAGAGCAATTGTACTTTACAAGCCTGATGCACAACCACCTCAAGCAAATGGAAGCACCACATTGGAAGGAAGCTCAAAAGTTCATCTTCTGAAAGTCCTAGAGACACGTAAGTCAGCATTGCAGAAAGAGCAAGGCATGGCATTTGCTCATGTTGTTGCTGCTGGTTTTGACATTGACTATATACCGCCTTTGATGTCATTTGTTGAATGCTTTGGTGCATCTCGCATGAAGGATACATGCACAAAATTCAGGGATCTTTGGAGAAGAAAACATGAAACTGGACAATGGCTTGAAATTGAAGCTGCTGAAATGACGTGCAATCGCTCAGACTTTTCTCCGTTTAATGTTTCTGGCATTATACTTCCCAGTATGGCCTCTGCATCCCATACTGAATTGGACTCGGAGAGTAATGGGAAAGCAAGTTCAGGTACCCAACATTTCCAGCATATTGTGAAATTATGA
Predicted protein sequences of Glyma15g20825
>Glyma15g20825.1   sequence type=predicted peptide   gene model=Glyma15g20825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGRKTWEDTNEERAIVLYKPDAQPPQANGSTTLEGSSKVHLLKVLETRKSALQKEQGMAFAHVVAAGFDIDYIPPLMSFVECFGASRMKDTCTKFRDLWRRKHETGQWLEIEAAEMTCNRSDFSPFNVSGIILPSMASASHTELDSESNGKASSGTQHFQHIVKL*






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