Report for Sequence Feature Glyma15g20460
Feature Type: gene_model
Chromosome: Gm15
Start: 18314018
stop: 18316665
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g20460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G26450 AT
Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614
SoyBase E_val: 8.00E-145 ISS
GO:0042545 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall modification
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0004857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity
SoyBase N/A ISS
GO:0030599 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity
SoyBase N/A ISS
PTHR22931 Panther
PHOSPHOENOLPYRUVATE DIKINASE-RELATED
JGI ISS
PTHR22931:SF5 Panther
METHYLESTERASE INHIBITOR-RELATED
JGI ISS
PF01095 PFAM
Pectinesterase
JGI ISS
PF04043 PFAM
Plant invertase/pectin methylesterase inhibitor
JGI ISS
UniRef100_I1MHL2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1MHL2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1MHL2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1MHL2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g20460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g20460
Paralog Evidence Comments
Glyma09g08910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g20460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g183700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g20460
Coding sequences of Glyma15g20460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g20460.1 sequence type=CDS gene model=Glyma15g20460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTTCCAGGATTTCGACATGATCACCGAGAGGCGGAGAAACGAGCAGAGGCTCAAGATGAAGAAGAAGATCCTCATCAGCGTCGTCTCCGCCGTCCTCCTCGCGTGCGTCGTAGGCGCCGCGGCATTCGTCGTTGTCCAAAGAACAGGCACTAATGCAAAGCACGCTACCCCAATGCCACAGAACACCGCCACGCCGCACGTGGATCAGAACTCCAGGATGGTGAAAATGATCTGTGGATCCGCAGAATACAAAGAAAAATGCGAAAGCACGCTCGAAGAAGCCCTAAAGAAGGACCCCAAATTGGCTCAACCCAAGGATCTTATCATGGTGTCAATGATTCTTGCGGAGAAGGAGGTTACCAATGCCTTCGATGGAACTGCAAAGATGATGGGCAATGCGTCCGAGGAAGAGAAGGGTGCGTACGAGGATTGCAAGGGTTTGTTCAAGGACGCCAAGGAAGAGCTTGAGCTGTCGATCACCGAGGTTGGCGACAACGACGCGGACAAGCTCTCCACAAAGGGTGCTGAACTGAACAACTGGCTCAGTGCGGTTATGTCTTACCAACAAACCTGCATTGATGGTTTCCCCGAAGGGAAGATCAAGGATGATTTCACCAGCATGTTTACTAACTCTAGGGAGCTTGTGAGCAATTCTCTTGCGGTTGTTTCGCAGTTTTCTTCCTTCTTTTCGATCTTCCAAGGCGCCGGGGGGATTCATCTTCCTTGGGAGACTACCAGTGATGATGCACTGGCACCTACTGCTTCTGGTTCTGCTTCTGGTGCCGGTGCTGGTGCTGGTGCTGGGTCTGTGTTCGGTTCTGATCCCTCTTCTTTTGGTCTTGGTTATGCTTCTGCTCCTGCTGGTGGTGTTGCTCTTGCTCCTGGTGTTGCTCCTGCTCCCGGTGCTGCCCCTGGCCCAGTTCCTTCTTTGCCTGCTGGTTCAATTCCTGCATGGACGGGCTCAGTTCCTGTTTGGGCCGGCCCATCCGAGTTCTTGGGATCAAATGAAAAGCCCACACCTAATGTTACCGTGGCCCAAGATGGCAGCGGAAACTTCAAAACCATCTCTGAAGCTTTGGCTGCCATCCCACCACAATACGACGGAAGGTACGTGGTTTATGTCAAAGAAGGAGTGTACGATGAGACCGTGACAGTGACAAAGAAAATGGTAAATTTAACCATGTACGGTGACGGACAGCAAAAGAGTATCGTCACTGGAAACAAAAATTTCGTGGATGGAGTCAGGACCTTCCAAACTGCATCATTTGTTGTACTTGGAGAGGGATTCTTGGGGAAAGACATGGGATTCAGAAACACAGCCGGTGCAGAGAAGCACCAAGCAGTGGCCGCAAGAGTGCAAGCCGACCGAGCCATATTCTTCAACTGCGCCTTCGAGGGCTACCAAGACACTCTCTACGCCCAAACCCACAGACAATTCTACCGCGACTGCTACATCTCTGGAACAATCGACTTCATCTTCGGCGACGCCTCCGCGGTGTTCCAGAACTGCACCATGGTGGTAAGAAAGCCACTGGAGAACCAGCAGAACATCGTGACAGCACAAGGGAGGCTCGACAAGCAGGAGAACACCGGCTTCGTCCTCCAGAAATGCGTGATCAAGGCCGACACCGACTTGGTACCCCTCAAAGACACAATCAAGAACTACCTCGGAAGGCCGTGGAAGGAGTATTCAAGAACCATCATCATGGAGACTCAGATTGATGACCTAATTCACCCTGATGGGTTTCTTCCTTGGGAAGGGAACTTTGCCCTAAGCACACTTTACTATGGTGAGTACAACAACAATGGGGCTGGTTCTAGCACCACTGCTAGGGTTAATTGGCCTGGCCGCAAAGTCATCAATAGGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCTCAACTAGGCCTGTACAGTTAA
Predicted protein sequences of Glyma15g20460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g20460.1 sequence type=predicted peptide gene model=Glyma15g20460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFQDFDMITERRRNEQRLKMKKKILISVVSAVLLACVVGAAAFVVVQRTGTNAKHATPMPQNTATPHVDQNSRMVKMICGSAEYKEKCESTLEEALKKDPKLAQPKDLIMVSMILAEKEVTNAFDGTAKMMGNASEEEKGAYEDCKGLFKDAKEELELSITEVGDNDADKLSTKGAELNNWLSAVMSYQQTCIDGFPEGKIKDDFTSMFTNSRELVSNSLAVVSQFSSFFSIFQGAGGIHLPWETTSDDALAPTASGSASGAGAGAGAGSVFGSDPSSFGLGYASAPAGGVALAPGVAPAPGAAPGPVPSLPAGSIPAWTGSVPVWAGPSEFLGSNEKPTPNVTVAQDGSGNFKTISEALAAIPPQYDGRYVVYVKEGVYDETVTVTKKMVNLTMYGDGQQKSIVTGNKNFVDGVRTFQTASFVVLGEGFLGKDMGFRNTAGAEKHQAVAARVQADRAIFFNCAFEGYQDTLYAQTHRQFYRDCYISGTIDFIFGDASAVFQNCTMVVRKPLENQQNIVTAQGRLDKQENTGFVLQKCVIKADTDLVPLKDTIKNYLGRPWKEYSRTIIMETQIDDLIHPDGFLPWEGNFALSTLYYGEYNNNGAGSSTTARVNWPGRKVINRDEATRYTVEAFLQGTWINGTGVPAQLGLYS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
