Report for Sequence Feature Glyma15g20420
Feature Type: gene_model
Chromosome: Gm15
Start: 18286045
stop: 18291231
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g20420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G34630 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr1:12685317-12687435 FORWARD LENGTH=481
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1398
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12459 Panther
UNCHARACTERIZED
JGI ISS
UniRef100_G7IIR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7IIR8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MHL0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHL0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g20420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g20420
Paralog Evidence Comments
Glyma09g08866 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g20420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g183500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g20420
Transcripts of Glyma15g20420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g20420.2 sequence type=transcript gene model=Glyma15g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACGCCACCCTCAAGGAGAAACGCCAATTAATGATACTATTACTACTCACTCTACTTTCGCATCTTTATTCCCTTTCTGTTCACTCTTTGAAATTACTTCCCCCCAGCCCACACTCCTCCATTATCCCTCCGCCGCCATGTCCCCGTCCTCCGAACACCACGGCGGAAACCATCGCTTTCCCGGGGAAGAAATCAACGGCTTCGGCAATGGCCAAGCGGAAATGTCCGCTCCTTCCACGGCCTCCTCGTCGGCGGTGCGCTGCATCGTCGACTCAATTCCGTCGAAGGAGCGGGAGAAGCTCCGGAGAATCCTCGTCGCCTCGGCGAAGGGTTTCTCAATCGGAGCCGGCCTCAAGGGAGGCCTCGCTCTCTTCGCGATCTTGGCGCGATTGACGCGCAAAAAGCCGCCAAGGAAGGGAATTGTGGTTTCGAACGGCGAAGCGATTGTGGCGGCTCTGAAGGAAACGCTGAGATACGGTTTGTTTCTCGGAACCTTCGCCGGAACGTTCGTGTCCACCGACGAGGTTATCGGTGCTCTCGCAGGTCATCGCAGGACAGCAAAGTGGAGGGCTCTGGTTGCCGGGGCGGTTGCAGGGTTGTCCATGCTTCTAACGGGGTTAGAAGATCAGCATACGAGTTTGGCCATTTACATTCTCATGCGTGCAGCTGTTTTGGCGTCTCGTTGTGGGATTAAGAGCAAACGATTTGGGAAAATCTGCAAGCCTCTCACGTGGAAGCATGGTGACATTTTCCTCATGTGTCTATCCTCCTCACAAATATTGTCTGCTTATATATTAAAGCAAGACAGTTTGCCAGCTTCATATAAATCCTTTCTCAATAAACATGGTGGAAAGGATCTAGTTATCTTACAAGGTGTAAAAGATATAGCTAGTGGCAAGCCTTTCACTAATTTGGGTGCAATAGAGAAATACTACAAGACCATGGGTGTCAATGTGAAATTAGACCCAAATATGAAAGTCCCATGCTCGATTGTACATGGGAATCAATCATGCAGCGGACACATCCTTTCGTTTCTCGTTCAAGCTTACCAAAGAGCACTACCTGTTTATCTTCCAGTTTACCTAATACCTGCACTTATAGTTCATAGAAAAGGACTTTTAAAAAGGCCTTACACAATATTAGCCAAGGGTCTTTTTGGCACTGCAAGATCAAGCTTGTTTCTGTCTGTGTATTGTGCTTCTGCCTGGATGTGGACGTGCTTTCTTTTCAGGATTTTGAAAAGATGTAACATTCCAATGGTGGCCATGGGAACGTTCCCAACTGGCCTTGCATTGGCCATTGAGAAGAAAAGCAGGCGAATAGAAATATCATTATACTGCCTTGCCCGGGCTATCGAGAGTTTCTTCACATGCATAGCGGATGCAGGATATCTGCCACAATCAAGAAGGATCAAGAGAGCTGATGTTGTGGTTTTCAGCTTGTCAACAGCCATCATAATGCATTGTTATGCAGAGGAGAGGGAAGTGTTTAGATCCAAATACTTAAATGTCCTTGATTGGGTATTTGGTGTACCTCCTCCTCCTTGTGAAACCCCACGATGCAAAGATGGGTAGGCACAAGTGCTAGCCCAGAAGGGTGGGTATTTTATCTTGAAAAATTGCCCTTGACTTGGTAGTTTATACATGATTTTTTACCTTCTCAAATTCATTGGTGGCCTTGAACCTGAATTTTGCACCAGGAAACACACTTTCTAACGCATTATTTCCAGCACATTTTTTTTATTGGTTGTAATTCATGCGTTTCTAAATAATCAATGAAATTCTTTAAATAGAAACCCATATCATTTAATGGAACTTAGGTGATATTTACTCAATAATAGTAGTGTATTGGAAAGACTGCGTTGGAAAATACGCTTTCCATTTTAAAATATATGAAGTTTTAATATATTTTTTTTCATATTAAGTGATGTTAAGAGT
Coding sequences of Glyma15g20420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g20420.1 sequence type=CDS gene model=Glyma15g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCCCGTCCTCCGAACACCACGGCGGAAACCATCGCTTTCCCGGGGAAGAAATCAACGGCTTCGGCAATGGCCAAGCGGAAATGTCCGCTCCTTCCACGGCCTCCTCGTCGGCGGTGCGCTGCATCGTCGACTCAATTCCGTCGAAGGAGCGGGAGAAGCTCCGGAGAATCCTCGTCGCCTCGGCGAAGGGTTTCTCAATCGGAGCCGGCCTCAAGGGAGGCCTCGCTCTCTTCGCGATCTTGGCGCGATTGACGCGCAAAAAGCCGCCAAGGAAGGGAATTGTGGTTTCGAACGGCGAAGCGATTGTGGCGGCTCTGAAGGAAACGCTGAGATACGGTTTGTTTCTCGGAACCTTCGCCGGAACGTTCGTGTCCACCGACGAGGTTATCGGTGCTCTCGCAGGTCATCGCAGGACAGCAAAGTGGAGGGCTCTGGTTGCCGGGGCGGTTGCAGGGTTGTCCATGCTTCTAACGGGGTTAGAAGATCAGCATACGAGTTTGGCCATTTACATTCTCATGCGTGCAGCTGTTTTGGCGTCTCGTTGTGGGATTAAGAGCAAACGATTTGGGAAAATCTGCAAGCCTCTCACGTGGAAGCATGGTGACATTTTCCTCATGTGTCTATCCTCCTCACAAATATTGTCTGCTTATATATTAAAGCAAGACAGTTTGCCAGCTTCATATAAATCCTTTCTCAATAAACATGGTGGAAAGGATCTAGTTATCTTACAAGGTGTAAAAGATATAGCTAGTGGCAAGCCTTTCACTAATTTGGGTGCAATAGAGAAATACTACAAGACCATGGGTGTCAATGTGAAATTAGACCCAAATATGAAAGTCCCATGCTCGATTGTACATGGGAATCAATCATGCAGCGGACACATCCTTTCGTTTCTCGTTCAAGCTTACCAAAGAGCACTACCTGTTTATCTTCCAGTTTACCTAATACCTGCACTTATAGTTCATAGAAAAGGACTTTTAAAAAGTGGCACATATGCTGGTTTTGTCATGAAAAGGGCTTCCTTGGAGGCTTGGACAATTAATTATTCCATGCCTTACACAATATTAGCCAAGGGTCTTTTTGGCACTGCAAGATCAAGCTTGTTTCTGTCTGTGTATTGTGCTTCTGCCTGGATGTGGACGTGCTTTCTTTTCAGGATTTTGAAAAGATGTAACATTCCAATGGTGGCCATGGGAACGTTCCCAACTGGCCTTGCATTGGCCATTGAGAAGAAAAGCAGGCGAATAGAAATATCATTATACTGCCTTGCCCGGGCTATCGAGAGTTTCTTCACATGCATAGCGGATGCAGGATATCTGCCACAATCAAGAAGGATCAAGAGAGCTGATGTTGTGGTTTTCAGCTTGTCAACAGCCATCATAATGCATTGTTATGCAGAGGAGAGGGAAGTGTTTAGATCCAAATACTTAAATGTCCTTGATTGGGTATTTGGTGTACCTCCTCCTCCTTGTGAAACCCCACGATGCAAAGATGGGTAG
>Glyma15g20420.2 sequence type=CDS gene model=Glyma15g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCCCGTCCTCCGAACACCACGGCGGAAACCATCGCTTTCCCGGGGAAGAAATCAACGGCTTCGGCAATGGCCAAGCGGAAATGTCCGCTCCTTCCACGGCCTCCTCGTCGGCGGTGCGCTGCATCGTCGACTCAATTCCGTCGAAGGAGCGGGAGAAGCTCCGGAGAATCCTCGTCGCCTCGGCGAAGGGTTTCTCAATCGGAGCCGGCCTCAAGGGAGGCCTCGCTCTCTTCGCGATCTTGGCGCGATTGACGCGCAAAAAGCCGCCAAGGAAGGGAATTGTGGTTTCGAACGGCGAAGCGATTGTGGCGGCTCTGAAGGAAACGCTGAGATACGGTTTGTTTCTCGGAACCTTCGCCGGAACGTTCGTGTCCACCGACGAGGTTATCGGTGCTCTCGCAGGTCATCGCAGGACAGCAAAGTGGAGGGCTCTGGTTGCCGGGGCGGTTGCAGGGTTGTCCATGCTTCTAACGGGGTTAGAAGATCAGCATACGAGTTTGGCCATTTACATTCTCATGCGTGCAGCTGTTTTGGCGTCTCGTTGTGGGATTAAGAGCAAACGATTTGGGAAAATCTGCAAGCCTCTCACGTGGAAGCATGGTGACATTTTCCTCATGTGTCTATCCTCCTCACAAATATTGTCTGCTTATATATTAAAGCAAGACAGTTTGCCAGCTTCATATAAATCCTTTCTCAATAAACATGGTGGAAAGGATCTAGTTATCTTACAAGGTGTAAAAGATATAGCTAGTGGCAAGCCTTTCACTAATTTGGGTGCAATAGAGAAATACTACAAGACCATGGGTGTCAATGTGAAATTAGACCCAAATATGAAAGTCCCATGCTCGATTGTACATGGGAATCAATCATGCAGCGGACACATCCTTTCGTTTCTCGTTCAAGCTTACCAAAGAGCACTACCTGTTTATCTTCCAGTTTACCTAATACCTGCACTTATAGTTCATAGAAAAGGACTTTTAAAAAGGCCTTACACAATATTAGCCAAGGGTCTTTTTGGCACTGCAAGATCAAGCTTGTTTCTGTCTGTGTATTGTGCTTCTGCCTGGATGTGGACGTGCTTTCTTTTCAGGATTTTGAAAAGATGTAACATTCCAATGGTGGCCATGGGAACGTTCCCAACTGGCCTTGCATTGGCCATTGAGAAGAAAAGCAGGCGAATAGAAATATCATTATACTGCCTTGCCCGGGCTATCGAGAGTTTCTTCACATGCATAGCGGATGCAGGATATCTGCCACAATCAAGAAGGATCAAGAGAGCTGATGTTGTGGTTTTCAGCTTGTCAACAGCCATCATAATGCATTGTTATGCAGAGGAGAGGGAAGTGTTTAGATCCAAATACTTAAATGTCCTTGATTGGGTATTTGGTGTACCTCCTCCTCCTTGTGAAACCCCACGATGCAAAGATGGGTAG
Predicted protein sequences of Glyma15g20420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g20420.1 sequence type=predicted peptide gene model=Glyma15g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSPSSEHHGGNHRFPGEEINGFGNGQAEMSAPSTASSSAVRCIVDSIPSKEREKLRRILVASAKGFSIGAGLKGGLALFAILARLTRKKPPRKGIVVSNGEAIVAALKETLRYGLFLGTFAGTFVSTDEVIGALAGHRRTAKWRALVAGAVAGLSMLLTGLEDQHTSLAIYILMRAAVLASRCGIKSKRFGKICKPLTWKHGDIFLMCLSSSQILSAYILKQDSLPASYKSFLNKHGGKDLVILQGVKDIASGKPFTNLGAIEKYYKTMGVNVKLDPNMKVPCSIVHGNQSCSGHILSFLVQAYQRALPVYLPVYLIPALIVHRKGLLKSGTYAGFVMKRASLEAWTINYSMPYTILAKGLFGTARSSLFLSVYCASAWMWTCFLFRILKRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESFFTCIADAGYLPQSRRIKRADVVVFSLSTAIIMHCYAEEREVFRSKYLNVLDWVFGVPPPPCETPRCKDG*
>Glyma15g20420.2 sequence type=predicted peptide gene model=Glyma15g20420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSPSSEHHGGNHRFPGEEINGFGNGQAEMSAPSTASSSAVRCIVDSIPSKEREKLRRILVASAKGFSIGAGLKGGLALFAILARLTRKKPPRKGIVVSNGEAIVAALKETLRYGLFLGTFAGTFVSTDEVIGALAGHRRTAKWRALVAGAVAGLSMLLTGLEDQHTSLAIYILMRAAVLASRCGIKSKRFGKICKPLTWKHGDIFLMCLSSSQILSAYILKQDSLPASYKSFLNKHGGKDLVILQGVKDIASGKPFTNLGAIEKYYKTMGVNVKLDPNMKVPCSIVHGNQSCSGHILSFLVQAYQRALPVYLPVYLIPALIVHRKGLLKRPYTILAKGLFGTARSSLFLSVYCASAWMWTCFLFRILKRCNIPMVAMGTFPTGLALAIEKKSRRIEISLYCLARAIESFFTCIADAGYLPQSRRIKRADVVVFSLSTAIIMHCYAEEREVFRSKYLNVLDWVFGVPPPPCETPRCKDG*