Glyma15g20400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g20400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	18260619
stop:	18267281
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79940	AT	Annotation by Michelle Graham. TAIR10: DnaJ / Sec63 Brl domains-containing protein \| chr1:30070023-30073237 FORWARD LENGTH=687	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0030176	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0721	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24075	Panther	FAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF02889	PFAM	Sec63 Brl domain	JGI		ISS
UniRef100_G7IIR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7IIR7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MHK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHK8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g20400

Paralog	Evidence	Comments
Glyma09g08830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g20400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g183400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20400

Limit To All Plant Sequences

>Glyma15g20400.1   sequence type=CDS   gene model=Glyma15g20400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCAGAGGAGAATAGTGCACTGTTCCCAATATTCATTTTGACGATAATGGCCATTCCTATTGTGCCATATACAATAACAAAGTTGTGCCGTGCTGCCAGTAAGAAATCAAAGAGCATTCACTGTCATTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGATTGAAATTTTCGATCCATTTAATATTCTAGGATTAGAGCCTGGAGCGGCTGAGTCTGAAATAAAGAAAAAGTATAGGAGACTTTCTATTCAATACCATCCAGATAAAAATCCGGATCCAGAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCATTGGTCATTGCTGTTGTTTATCTCTCCAGATCATCAAAGTATACCGGAAACTATGTGATGCATCAAACACTTTCTACTTACTATTACCTTATGAAGCCTTCTTTGGCCCCCAGCAAAGTCATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTTCGTAGGACTGATGATGAACCTCTTCAGAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAATTTTGGAAGCAACATCCTGCACTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCTCCATCTTTACAAAGTGATTTCAGACGAATTTTAGAAACAGCACCCCGCCTACTTGAAGAATTAATTAAGATGGCAGTTATACCACGGAATGCTCAGGGCCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCGTCCAGGCTGTTCCTCTTAGTGCTAGAAAGTCTACTGGTGGATCACCTGAAGGAATTGCACCATTTCTGCAGTTGCCACATATAAGTGAGACTATTATTATTAAGAAGGTGGCCCGCAAGGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCTGGAGCGAGCTGACCTGCTTATTCAAACAGGTGGGTTATCTTCTACGGAAGTGCAAGACATTGAGACGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGTGACATTGTGACCCTCCATGCTTGGATAAATGTTAAAAGGGGTAATGGCCTGATTGGTGCCCTTCCACATGCCCCCTACTACCCATTTCATAAGGAAGAAAATTACTGGTTTTTGCTTGCGGATTCTGTTTCAAATAATGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTTCTGCATCTAAGGCAATTGAGGAGTCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACCAGTAAGGCAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTAGTATTGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTACAGTTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTAAAGCTCAAAGTTTTGAAACGGACTCGGGCTGGCACCAGGGCTGCTGTTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAACGAGGATGAAGAGTATGATGATGACTACGAGAGTGAGTACAGTGAAGATGAAGAGGATGATCAGAACACAAAAAATAAGCAACAAGCTGCCAATGGCACTGTGAATAAACATGGTAAAGCTGCAGAAAGTTCAGGCTCTGAGGAGGAATGA

Predicted protein sequences of Glyma15g20400

Limit To All Plant Sequences

>Glyma15g20400.1   sequence type=predicted peptide   gene model=Glyma15g20400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCHCSECSRSGKYHKSIFKRISNVSTCSNFTLLLLWVVMIVLVYYIKTMSREIEIFDPFNILGLEPGAAESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEYIAKAYQALTDPIARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTRELAALSPSLQSDFRRILETAPRLLEELIKMAVIPRNAQGHGWLRPAIGVVELSQCIVQAVPLSARKSTGGSPEGIAPFLQLPHISETIIIKKVARKVRTFQELHDMDSLERADLLIQTGGLSSTEVQDIETVLDMMPSLTLEVTCETEGEEGIQEGDIVTLHAWINVKRGNGLIGALPHAPYYPFHKEENYWFLLADSVSNNVWFSQKVSFMDEAAAVTSASKAIEESMEGSGANVKETSKAVAEAVEKVKGGSRLVLGKFQAPSEGNYSLTCYCLCDSWLGCDRRTNLKLKVLKRTRAGTRAAVLADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDDQNTKNKQQAANGTVNKHGKAAESSGSEEE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain