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Report for Sequence Feature Glyma15g20390

Feature Type:gene_model
Chromosome:Gm15
Start:18223231
stop:18224238
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g20390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60220AT Annotation by Michelle Graham. TAIR10: TOXICOS EN LEVADURA 4 | chr3:22254790-22255794 REVERSE LENGTH=334 SoyBaseE_val: 9.00E-70ISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0320 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF2Panther RING-FINGER PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7LDE0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7LDE0_MEDTR SoyBaseE_val: 3.00E-90ISS
UniRef100_I1MHK7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MHK7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g20390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g183300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g20390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g20390
>Glyma15g20390.1   sequence type=CDS   gene model=Glyma15g20390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTACTTCTGATTCCGTTCCTTCTTTCACCGCTGTCGGATACACACGCACTGACGCTACTTCTCCACCAAACAACCACCACCTATCCTCGCTATCACACGTCACTCTCATTACCGTAACGGTCCTCGCCGTCGCCGTTACGGTTTCCTTAGCCTTGTACTTCCTTCTCCGCTACCGTAACAGTAACCGTTTTCGTTTCCTCCGTCGAGTCTCTCCGTCGACATCCGCCGCAGCGTTCTCCTCCTCCGGCAATCGGATATTGCCGGAAACCACTTCTTCGTCTTCCGTTTTCGACTTGCTCCCGACGTTCACCTTCTCCTCCATCACGCGCCGCGCCGACGCCGCTGGCGGCGGCGACTGCGCCGTTTGTTTGTCGAAGTTCGAGCAGAACGACCTTCTCCGCTTGCTACCTCTCTGCTGCCACGCATTTCACGCGGAATGCATCGACACGTGGCTTCGGTCGAAGCTCACGTGTCCGCTCTGCCGATCCACTGTCGCCGCGTCTGAATCCGACCTCGCGATGGTTTTCCGGTCGTCGTCCGTCGCTGGCAGCGACAGCTTCCGGCTGGAGATAGGGAACATTAGTAGCCGCCGCGAAGGAGATATCACCGCCGTTGCCGGAGAAACGCGCGGAAGGTCATATTCCGTTGGCGCGTTCGAGTATCTCATTGACGAGGAAGCTGAGGTTGAGGTCGAGGTTGCGTTCGGTTTAGCTGACCGGAGAATCGTTTCCGGCGAGAAAAACGACGGTGCTCCGGTGGTGGCTCCGGCGGATTCTCTAGCTGGTGAGGTAGGGCGTGGTGGTGGAAGTAGAAATGGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGGTGTCGTTTCGGAGTTCTGGAAGCTTCTTCACTGGGAGCAGTCGCCGAAGCGACGTCGTTTTGGGAGGAGATTACGATGTAGAAGCGAGCCGTTTCGGGGACGAAATCGGTGAAATGTTCCGATGGCTCTCAGGGGTTTGA
Predicted protein sequences of Glyma15g20390
>Glyma15g20390.1   sequence type=predicted peptide   gene model=Glyma15g20390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSDSVPSFTAVGYTRTDATSPPNNHHLSSLSHVTLITVTVLAVAVTVSLALYFLLRYRNSNRFRFLRRVSPSTSAAAFSSSGNRILPETTSSSSVFDLLPTFTFSSITRRADAAGGGDCAVCLSKFEQNDLLRLLPLCCHAFHAECIDTWLRSKLTCPLCRSTVAASESDLAMVFRSSSVAGSDSFRLEIGNISSRREGDITAVAGETRGRSYSVGAFEYLIDEEAEVEVEVAFGLADRRIVSGEKNDGAPVVAPADSLAGEVGRGGGSRNGNGWLKDYVDRLSNTVSFRSSGSFFTGSSRRSDVVLGGDYDVEASRFGDEIGEMFRWLSGV*






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