Report for Sequence Feature Glyma15g20380
Feature Type: gene_model
Chromosome: Gm15
Start: 18186211
stop: 18194210
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g20380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G43240 AT
Annotation by Michelle Graham. TAIR10: ARID/BRIGHT DNA-binding domain-containing protein | chr3:15210032-15214440 REVERSE LENGTH=747
SoyBase E_val: 0 ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22970 Panther
FAMILY NOT NAMED
JGI ISS
PTHR22970:SF1 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01388 PFAM
ARID/BRIGHT DNA binding domain
JGI ISS
UniRef100_B9RR31 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RR31_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233B00D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B00D related cluster n=1 Tax=unknown RepID=UPI000233B00D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g20380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g20380
Paralog Evidence Comments
Glyma09g08690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g20380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g188300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g20380
Coding sequences of Glyma15g20380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g20380.1 sequence type=CDS gene model=Glyma15g20380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGTTGCATTCTCAGGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTCCTGAGTGGTAAATCACGTGACATTAAGCAAAAACAGAAGCAGGGTACTGCTTCTGAGGATCAATTTCCTTATCCCTTTCCAGAACTTTCTTCCTCTGGTCGTCTTGAGGTCAAGGTATTGACCAAACCTACGGCTGATGAACTCGGTCGATCTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTTGAAGATAGCGAGGAAATTGGGCCTCTTGTATGGGAAGATTTTGACCTGTCTGTCCCAGAAGCCTTGTGTGGATTGTTTTCTTCCAAAATACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTCCTTAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCGACATTCTTTTTTCTCTGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTTCAGCTTGCTCTGGCATCTTTTAGACTATACTGTGTACAAAACAATGTCTTACCTTCTAACAGCCATAAGGGTGCTGGAAAGCTTGGGCCACAAATTCTTGGGGTTCCTCCCAACATTGATGTCAGTCCATGTGTAGCAGACATGAAGGAAGAGGAAGGTTCACCGGAGACTATTTCTTCTCTAAAGATATATGATGATGATGTGAACATGAGATTTCTTATTTGTGGAGTTCCCTGCACATTGGATGCTTGCTTGTTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTATTTGCAGAAATACGTGGATGCAAACTTCACAACCGGACAAGTGCAACACCACCACCTCTCCAGGCAGGAACATTCTCACGTGGTGTAGTGACTATGCGTTGTGATATATCAACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTGATTGAGAAGAGTCAACTTGTCCAGGCATTTCCTAATCATCAACAAAGTAAAGCACCTTCATCCGAGCCTCGAAGATCAGCCTCAGTAGCGTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCACCCAATTTGGCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGTATTCAGGCATTGCCAGTTGCATCTTTTAGTAAAGATGATGCCGAGCGCCTTCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAACTGTCCTAAGGATCATGTTTTCTCTGGTATTCCAAGTTGGCTGAAGCCTCCACCACCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATTAATGCTAGTGGCCGGGGAGTTGAAGCTATTGGCAGTCATAGACAGAAATTTATTGTTGCTTCTATGAGGCCAATCCCTCACTCTAATAGACACAAGATTCTCCCCTTTTCTGGATTGTCTGAGGGTACAAGATATGATGGAGACCATGGAAAATCAAATCTACCACTTGCTCTTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAATAGGAAATCTGTGTCGAATTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGCTTGCTCTGAGGAGGAATTCTTGAGGGATGTAATGCAGTTTTTGATACTTCGGGGGCATAATCGTCTAATTCCGCCTGGTGGACTTTCTGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCATACTATGACAAATAGAATGACAGGGGTTGGCAATACACTCAAAAGACATTATGAAACTTATCTCTTAGAATACGAATTATCTCATGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGTGTATGTGGTGAGTGGGCTCATTTTGGCTGTGACAGGCGGCAAGGACTTGGAGCATTTAAGGACTATGCTAAAACCGATGGGCTGGAGTATGTTTGTCCTCGCTGCAGTGCGTTAAAATTCAGTAAAAAATCCCAAAAAACTGCAAATGGTTATTAA
Predicted protein sequences of Glyma15g20380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g20380.1 sequence type=predicted peptide gene model=Glyma15g20380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMLHSQGVSRHCSLLAVLSGKSRDIKQKQKQGTASEDQFPYPFPELSSSGRLEVKVLTKPTADELGRSLEQLQPDFVYLQGQQLEDSEEIGPLVWEDFDLSVPEALCGLFSSKIPNTVYLETPKGEKLAEALLNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVLPSNSHKGAGKLGPQILGVPPNIDVSPCVADMKEEEGSPETISSLKIYDDDVNMRFLICGVPCTLDACLLGSLEDGLNALLFAEIRGCKLHNRTSATPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNHQQSKAPSSEPRRSASVACGSSVFEVCMRVPAWASQVLRQLAPNLAYRSLVMLGIASIQALPVASFSKDDAERLLFFCTRQEKENCPKDHVFSGIPSWLKPPPPSRKRSEPCSSSKSINASGRGVEAIGSHRQKFIVASMRPIPHSNRHKILPFSGLSEGTRYDGDHGKSNLPLALIKHNVSGPTSVTNRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLILRGHNRLIPPGGLSEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELSHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
