SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g20365

Feature Type:gene_model
Chromosome:Gm15
Start:18167178
stop:18167645
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g20365
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53690AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320 SoyBaseE_val: 1.00E-21ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR11685Panther ARIADNE RING ZINC FINGER JGI ISS
PTHR11685:SF66Panther SUBFAMILY NOT NAMED JGI ISS
PF01485PFAM IBR domain JGI ISS
UniRef100_B9RR33UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RR33_RICCO SoyBaseE_val: 1.00E-26ISS
UniRef100_UPI000233BA58UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BA58 related cluster n=1 Tax=unknown RepID=UPI000233BA58 SoyBaseE_val: 5.00E-43ISS

Expression Patterns of Glyma15g20365
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g20365 not represented in the dataset
Glyma15g20365 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20365 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g188200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g20365
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g20365
>Glyma15g20365.1   sequence type=CDS   gene model=Glyma15g20365   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGAGATCAGTACCTATTTAATTTACAAAAGCTCCAAAACAACGTTGTGAACCTTACTTGCCCCGAGTCAAGGTGCTACGGGGAGCTTAGTCCTCTCTTCTTCGAGCCCATGCTACCCAACAACGTGCTGAAGGACAAGTTCTACTGTCCCTTTAAGGATTGCTCTGCACTGTTTGTTCGCGACACTGAGGATAATGACATTACACAATCTGAGTGTCCCATTTGTAGGAGGTTGTTCTGTGCACAGTGCAAGGCACCCTGGAACCAAGGGATACGCTACAAGGAGTTTCAGAAACTGAAGAAGAACGAGAAGGAGAGACAAGATATCATGCTCATGATCCTCGATGAGTGA
Predicted protein sequences of Glyma15g20365
>Glyma15g20365.1   sequence type=predicted peptide   gene model=Glyma15g20365   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGDQYLFNLQKLQNNVVNLTCPESRCYGELSPLFFEPMLPNNVLKDKFYCPFKDCSALFVRDTEDNDITQSECPICRRLFCAQCKAPWNQGIRYKEFQKLKKNEKERQDIMLMILDE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo