Report for Sequence Feature Glyma15g20350
Feature Type: gene_model
Chromosome: Gm15
Start: 18155678
stop: 18158286
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g20350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53690 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320
SoyBase E_val: 7.00E-94 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR11685 Panther
ARIADNE RING ZINC FINGER
JGI ISS
PTHR11685:SF66 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
PF01485 PFAM
IBR domain
JGI ISS
UniRef100_D7LUL3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LUL3_ARALL
SoyBase E_val: 4.00E-92 ISS
UniRef100_UPI000233BA58 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BA58 related cluster n=1 Tax=unknown RepID=UPI000233BA58
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g20350
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g20350
Paralog Evidence Comments
Glyma09g08670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g20350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g188100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g20350
Coding sequences of Glyma15g20350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g20350.2 sequence type=CDS gene model=Glyma15g20350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGAACCCTGAGCCGCCACCTCCGCCGACGATGGTTCCGCCGGCGACGCCGCTCAACCGCGAAACGACGTCGCTGAGGAAGAGGAACAGAATCCGAACTCCGGTTCCTCCTTTCGCGGATGTCGTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTCAGGGGCACCACGAAATCAAACGCGATCGCCGTGGAGCAATACGACGCCGTTTCCGCTTCCGTTTCCAACCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGACGTGCGCATCCTCAACTTTACTCCGCCAAACACGTCCTTTGGAAAACGCCGCAAGAAATCATCATCGAAAGGAGAGTGCTCCAGCACCGCACCGTTCCTCTGCGAAATCTGCACCGAAACGAAAACCGACAGAGACTCCTTCTCCATCACCGGATGCCGCCACGTGTACTGCAACTCCTGCGTCGCGCAGTACGTCGAATCGAAGCTCGAGGATAACGTCGTCAACATCCCCTGCCCTGTGCCGGGATGCAGGGGATTACTGGAGGCTGATTATTGCCGTGAAATTCTCTCGCCTCGCGTCTTCGATCGCTGGGGGAATGCACTTTGCGAGGCTGTGATTGATGCTGAGGAGAAATTCTACTGTCCCTTTGCGGATTGTTCTGCTATGTTGATTAGGGCAAGTGAAGATGCTGACATTAGGGAATGTGAGTGTCCAAACTGTAGGAGGCTGTTCTGCGCCCTGTGTAGGGTGCCCTGGCACGAAAACATACCCTGCGAGGAGTTTCAGAAGCTCAACGCGGAAGAGAGGGAGAGGGAGGATATCATGCTCATGAGCCTCGCTAAGCAAATGCAGTGGAAGAGGTGCCCCCACTGTAGATTCTACGTCGCCAAATCCGAAGGCTGCATGTACATGAGATGCAGGTGTGGAAACTCCTTCTGTTACAAATGTGGAGCCCCTATCTTAACCGGGTCCCATAGTTGCAGCTATTGTTTTCGTTAA
Predicted protein sequences of Glyma15g20350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g20350.2 sequence type=predicted peptide gene model=Glyma15g20350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLNPEPPPPPTMVPPATPLNRETTSLRKRNRIRTPVPPFADVVDVDSSFFTTPISFRGTTKSNAIAVEQYDAVSASVSNPVHVINLSDTEDDDDVRILNFTPPNTSFGKRRKKSSSKGECSSTAPFLCEICTETKTDRDSFSITGCRHVYCNSCVAQYVESKLEDNVVNIPCPVPGCRGLLEADYCREILSPRVFDRWGNALCEAVIDAEEKFYCPFADCSAMLIRASEDADIRECECPNCRRLFCALCRVPWHENIPCEEFQKLNAEEREREDIMLMSLAKQMQWKRCPHCRFYVAKSEGCMYMRCRCGNSFCYKCGAPILTGSHSCSYCFR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
