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Report for Sequence Feature Glyma15g20285

Feature Type:gene_model
Chromosome:Gm15
Start:18102683
stop:18103132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g20285
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14250AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303 SoyBaseE_val: 2.00E-30ISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR11685Panther ARIADNE RING ZINC FINGER JGI ISS
PTHR11685:SF66Panther SUBFAMILY NOT NAMED JGI ISS
PF01485PFAM IBR domain JGI ISS
UniRef100_B9RGS0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RGS0_RICCO SoyBaseE_val: 2.00E-28ISS
UniRef100_UPI000233BA56UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BA56 related cluster n=1 Tax=unknown RepID=UPI000233BA56 SoyBaseE_val: 8.00E-75ISS

Expression Patterns of Glyma15g20285
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g20285 not represented in the dataset
Glyma15g20285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20285 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g183200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g20285
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g20285
>Glyma15g20285.1   sequence type=CDS   gene model=Glyma15g20285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTGGGAGAAGGCGCTGTGCGAGTCCGTGATTCCCGAGAAGGACAAGTTCTATTGTCCCTTCAACGATTGCTCGGCGCTGTTGTTGTGCAGTGAGCCTCACAAGGGAATGATCGTTAGAGCCTCGAACTGCCCTCATTGCAAGAGGATTGTCTGCGTTCAGTGTAGAGCACCATGGCACGCGGAGATTAGTTGCGACAAGTTTCAGATGTTGAAGAACACGTGCGACGATCTGATAATTGATCATGCAAAGAGAAGAAAGTGGAGACGGTGCCCTAACTGCAAGCATTACGTTGAGAAGAAACAAGGATGCGATGCCATGACATGCTGTGTAAAAACTACTTGA
Predicted protein sequences of Glyma15g20285
>Glyma15g20285.1   sequence type=predicted peptide   gene model=Glyma15g20285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWWEKALCESVIPEKDKFYCPFNDCSALLLCSEPHKGMIVRASNCPHCKRIVCVQCRAPWHAEISCDKFQMLKNTCDDLIIDHAKRRKWRRCPNCKHYVEKKQGCDAMTCCVKTT*






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