Glyma15g20260 - SoyBase

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Report for Sequence Feature Glyma15g20260

Feature Type:	gene_model
Chromosome:	Gm15
Start:	18096073
stop:	18101573
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26460	AT	Annotation by Michelle Graham. TAIR10: RED family protein \| chr2:11255049-11258913 REVERSE LENGTH=585	SoyBase	E_val: 0	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2498	KOG	IK cytokine down-regulator of HLA class II	JGI		ISS
PTHR12765	Panther	RED PROTEIN (IK FACTOR) (CYTOKINE IK)	JGI		ISS
PF07807	PFAM	RED-like protein C-terminal region	JGI		ISS
PF07808	PFAM	RED-like protein N-terminal region	JGI		ISS
UniRef100_B9RR36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Red protein, putative n=1 Tax=Ricinus communis RepID=B9RR36_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MHK4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHK4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g20260

Paralog	Evidence	Comments
Glyma09g08650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g20260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g183100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20260

Limit To All Plant Sequences

>Glyma15g20260.1   sequence type=CDS   gene model=Glyma15g20260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGCTTCCAACAAGAAAAACCACAAAGAGAAACCAATTCGCCGCAAGGAAGAAAAACCGGAAGAACCGGAAGTGCCGAAATACAGAGATCGAGCTAAAGAGCGTAGAGAGGATCAGAATCCTGATTATGAACAAACTGAGCTTGGATTTCATGCAGTTGCTCCACCTGGTACTGTGGATATTCGGTCATCTGATGCGCACAAGTTATCTATTGAGAAGAGCAAATACCTTGGAGGTGATGTGGAACACACACATTTGGTCAAAGGTTTGGATTATGCATTGCTGAACAAAGTAAGAAGTGAGATAGATAAGAAGCCAGAGACTGGGGATGATGTTGAGGGGAAATCCAGGTCTGCTAAGGAAGACCAACAAGTGTCAATTCGCACAGCAACTGCAAAGTCAGTTTATCAGTGGATTGTCAAGCCTCAGACCATTAGTAAGACAAATGAGATGTTCCTCCCTGGTCGAATGACATTTATTTATAACATGGAGGGTGGATACCATCATGATATTCCAACAACCTTGCACCGTAGTAAAGCTGACTGTCCGGTGCCAGAGGAAATGGTTACAGTTAATGTTGATGGATCTGTTCTAGATCGAATTGCTAAAATAATGTCATATCTTCGTCTTGGTTCTTCTGGGAAGATCCTAAAGAAGAAAAAAAAGGAAAAGGATGCAAAAGGGAAGATTTTGGCTGTTGGTAATGGATTTGACAAAGAGGATAAGCCATCAAAGGTTGAAGGTGGGGCAAAAAATCAAACTGAAAAAGAAATTATTCCTCCACCTCCCATAAAGAAAAATCCTCTTCATTCAAGAGAGAAACAAGGCCCAGCTGTTGCTAGAGCAGAAGATGATGACATTTTTGTAGGTGAAGGGGTTCACTATGATGTACCTGGTAAAGACTTGAGCCAAAGTCCGGTCTCTGAGGACATGGAAGAGTCTCCTAGGAACAAAGAAAAACCTTCATATGTCACAGAACCTACTTATGGTCCTGTCCCACCTTCAATGGTTCCTCAAGGGTGGCAAGAAACAAATGGATATGATGTAATGCAAACACAAGCCTTTGATGCTGGCTACCAAGGAGAGTGGCAGGAATACCAGTATGCTGAACAACTGGCTTACCCAGATCAGTATCTTCAGCAAAATATGCAGCCTTATGATGTGCAAGCAGGTTTAAATCTTCCACAAGATCCACGCTTTATGTCTCAAGAAGAAAAGGATCGGGGTTTAGGATCAGTGTTTAAGCGAGATGACCAGAGACTTCAACAGCTGAGGGAGAGAGATGCTCGTGAAAAAGATCCCAACTTCATCTCAGAGAGTTACTCTGAATGTTACCCAGGGTATCAAGAATATAACCGTGAGATAGTGGACAGTGATGATGAAGATGACTTATCCAAAATGGATATGGGTGGAAGGGCAAAGGGTCGTCTTCATAGATGGGACTTTGAAACTGAAGAGGAATGGGCAACTTACAATGAGCAGAAGGAAGCAATGCCAAAAGCTGCATTCCAGTTCGGTGTGAAGATGCAAGATGGCCGGAAGACCCGAAAGCAAAACAAGGACCAGAAGCTCAATAATGATTTGCACAAGATCAATAAGATACTTGCCAGAAAGAAGATGGAAAAGGACACGAATGGTGAGGGAGGCCACCATTATGATGATGAACCAACACCTGGAAAGAAGCTTCGAATATGA

Predicted protein sequences of Glyma15g20260

Limit To All Plant Sequences

>Glyma15g20260.1   sequence type=predicted peptide   gene model=Glyma15g20260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTASNKKNHKEKPIRRKEEKPEEPEVPKYRDRAKERREDQNPDYEQTELGFHAVAPPGTVDIRSSDAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPETGDDVEGKSRSAKEDQQVSIRTATAKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKILKKKKKEKDAKGKILAVGNGFDKEDKPSKVEGGAKNQTEKEIIPPPPIKKNPLHSREKQGPAVARAEDDDIFVGEGVHYDVPGKDLSQSPVSEDMEESPRNKEKPSYVTEPTYGPVPPSMVPQGWQETNGYDVMQTQAFDAGYQGEWQEYQYAEQLAYPDQYLQQNMQPYDVQAGLNLPQDPRFMSQEEKDRGLGSVFKRDDQRLQQLRERDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILARKKMEKDTNGEGGHHYDDEPTPGKKLRI*

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