Glyma15g20230 - SoyBase

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Report for Sequence Feature Glyma15g20230

Feature Type:	gene_model
Chromosome:	Gm15
Start:	18048545
stop:	18050900
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53920	AT	Annotation by Michelle Graham. TAIR10: GDSL-motif lipase 5 \| chr1:20137725-20139637 FORWARD LENGTH=385	SoyBase	E_val: 1.00E-103	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_B9RR37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RR37_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MHK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MHK2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g182900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20230

Limit To All Plant Sequences

>Glyma15g20230.2   sequence type=CDS   gene model=Glyma15g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGCTCCTTTGTTTGCATAACCTTAATCCAGTTCATTGCTTCAATGAGTTTCAGCAAATCCCAGAGCCTCATAAACGAAACTAATACCAGCACAACTACCACTACTACTAAGGCCTTTTTCATATTTGGTGACTCTAGTGTAGATTCTGGCAACAACAACTACATAAATACTATTCCTGAGAACAAAGCAGATTACAAGCCATATGGACAAAATGGTTTTTTTCAAAAACCCACTGGACGATTCTCAGATGGCCGTGTCATTGTGGATTTTATAGCTGAATATGCTAAGCTGCCACAAATTCCTCCGTTTTTACAACCAAATGCTGATTATAGTAACGGTGTCAACTTTGCTTCTGGTGGGGCCGGTGTTCTTGCTGAAACCAATCAAGGACTGGCGATTGATCTTCAAACACAATTGAGCCACTTTGAGGAAGTCAGAAAATCACTATCAGAAAAGCTTGGAGAGAAGAAGACAAAGGAATTGATCTCAGAAGCAATTTATTTCATTAGCATAGGAAGCAACGATTACATGGGCTATCTGGGTAACCCAAAAATGCAAGAAAGCTACAATACTGAGCAATACGTTTGGATGGTCATTGGAAACTTGATACGGGCAATCCAAACTTTACATGAGAAAGGGGCTAGAAAGTTTGGATTCTTAGGTTTGTGTCCATTGGGTTGCTTGCCAGCCCTTAGAGCTCTAAACCCGGTAGCCAACAAAAGTGGTTGTTTTGAAGCAGCTTCTGCTCTTGCTCTAGCACATAACAACGCTTTGAAGCTTTTTCTCCCAAACCTCAAGCCTTACCTTGAAGGATTCATGTACTCTTACTCTAGTTTCTATAATTGGCTTCGTGATAGAATAGATAATCCCACAAAATATGGTTTTAAGGATGGAGTCAATGCTTGCTGTGGAAGTGGACCTTATGGGGGTGTCTTCACTTGTGGAGGTACAAAGAAAGTTGAAGAGTTCAGCTTATGTGACAATGTTGAATATCATGTGTGGTGGGATTCTTTTCACCCAACAGAGAAGATCCATGAGCAATTTGCTAAGGAAATGTGGAATGGATCACCTTGCTCGGTACGACCGTACACTTTAGAAGACTTCTTCTCCAAAAATGAGATGATCAAACCCACTATTTCTAATGTAGTTGATTCCCCAAAAACCGAGCATGGGCAATTTCACTACTGA

Predicted protein sequences of Glyma15g20230

Limit To All Plant Sequences

>Glyma15g20230.2   sequence type=predicted peptide   gene model=Glyma15g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCSFVCITLIQFIASMSFSKSQSLINETNTSTTTTTTKAFFIFGDSSVDSGNNNYINTIPENKADYKPYGQNGFFQKPTGRFSDGRVIVDFIAEYAKLPQIPPFLQPNADYSNGVNFASGGAGVLAETNQGLAIDLQTQLSHFEEVRKSLSEKLGEKKTKELISEAIYFISIGSNDYMGYLGNPKMQESYNTEQYVWMVIGNLIRAIQTLHEKGARKFGFLGLCPLGCLPALRALNPVANKSGCFEAASALALAHNNALKLFLPNLKPYLEGFMYSYSSFYNWLRDRIDNPTKYGFKDGVNACCGSGPYGGVFTCGGTKKVEEFSLCDNVEYHVWWDSFHPTEKIHEQFAKEMWNGSPCSVRPYTLEDFFSKNEMIKPTISNVVDSPKTEHGQFHY*

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