Glyma15g20210 - SoyBase

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Report for Sequence Feature Glyma15g20210

Feature Type:	gene_model
Chromosome:	Gm15
Start:	18002554
stop:	18018707
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43220	AT	Annotation by Michelle Graham. TAIR10: Phosphoinositide phosphatase family protein \| chr3:15197123-15202653 REVERSE LENGTH=818	SoyBase	E_val: 0	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
KOG1888	KOG	Putative phosphoinositide phosphatase	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF9	Panther	SYNAPTOJANIN-RELATED	JGI		ISS
PF02383	PFAM	SacI homology domain	JGI		ISS
UniRef100_G7JS42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyphosphoinositide phosphatase n=1 Tax=Medicago truncatula RepID=G7JS42_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MHK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MHK1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g20210

Paralog	Evidence	Comments
Glyma09g08586	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g20210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g182800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20210

Limit To All Plant Sequences

>Glyma15g20210.1   sequence type=CDS   gene model=Glyma15g20210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCGTCGGAGAATGAACCTTCTTCTCACTCTTCTCCTCCTGCACACGCGTGTTTGCATAAGTTCAGGCTCTATGAGACTCTTTCGAACTTTTACATGATAGGAAGGGACAAGAGCAGGACTTATTGGAGAGTGTTAAAGATTGACCGTCTAGATCCCTCCGAGCTGAATGTGCTTGAAGATTCCACCACATATACAGAAAGTGAATGTTCTGACCTGTTGAGGCGTATACATGAGGGGAACAGGTCCACAGGTGGACTGAAATTTGTTACAACTTGTTTTGGAATTGTTGGGTTCATAAAATTTTTGGGCCCTTACTACATGCTGCTTATCACAAAAAGAAGGCAAATTGGTGCAATCTGTGGTAATACAGTATATGCTATCTCAAAGAGTGAGATGATTCCACTGCAAAATTCATCTGTTCATTCTAGCATCACCGATTCTATAAATGAAAACAGATACAAGAAGCTCCTATGCATGGTAGACCTTACGAAGGATTTCTTTTTTAGCTACTCATATCATATTATGCGTAGTCTTCAAAAGAATTTGTGTGATAGTGAGACAGGCCATGTTCTTTATGAGACCATGTTTGTCTGGAATGAGTCTTTGACTCGAGAAATCAGGAATCACCTCCAGAATACTATTTGGACAGTTGCTCTAGTGTACGGTTTTTTTAAACAGGAAACACTTACAATATCTGGGCGGGAGTTCATACTTACACTCGTTGCAAGACGGTCTCGCCATTATGCTGGCACTAGGTATTTGAGACGAGGTGTAAATGATGAGGGTAGAGTCGCTAATGACGTGGAGACAGAACAAATTGTATTTGAGGATGTTCCTGAAGGTCTTCCGGTCCAAATATGCTCTGTTGTCCAGAATCGGGGTTCAATCCCTCTTTTCTGGTCACAGGAAACTTCACGTCTAAATCTTAAGCCGGATATTATATTGTCAAAGAAAGATCAGAATTATGAAGCCACTAGACTTCACTTCGAAAATCTTGTCAAAAGATACGGGCATCCTGTAATAATTTTGAATTTGATTAAGTCACACGAAAGGAAACCTCGAGAGTCCATACTTCGTTCCGAGTTCGGTAAGGCTATAGATTTCATTAACAAAGATTTATCACAGGAGAACAGGTTGAGGTTTCTTCATTGGGATCTTAAACATTTTCAGAGCAAAGCTACAAATGTTTTGCTACTTCTGGGAAAAGTGGCTGCATATGCTTTGACATTAACAGGTTTTTTATATTGTCAAGTGCCACCAACTCCTAGACCTGAAGACTGTATAAAATGTCCATCTATTAGTTTTGCATACGGCAATATCGATAAGGGAAGCTTTCAACCCACAAGACAATCTGATGTCAACAATGAAGATGGTAATACTTTAGAGAGGAAACCTAGTGGAGAAAACAACCTTGCTAACGGAAACCATTTTGTCAAGCCACCCATGTTCCAGAGGGGGGTTCTCAGAACCAATTGCATAGACTGCTTAGATCGCACAAATGTTGCACAATATGCATATGGGTTGGCTGCTCTTGGCCACCAGCTTCATGCTCTGGGAATTATTGACCACCCCAAAATTGACCTTGATGATCCTCTAAGTGATGGTTTGATGGGATTTTATGAGCGGATGGGTGACACACTTGCACACCAGTATGGTGGTTCTGCTGCACACAAAAAGATATTCTCTGAGAGGAGGGGGCAATGGAAAACTGCAACACAATCCCAAGAGTTTTTTAGGACTCTTCAACGCTATTACAGCAATGCTTACATGGATGCTGAGAAGCAAAATGCAATTAACATATTCCTGGGGCATTTTCAGCCACAACTGGGTAAACCTGCTCTATGGGATTTGAGCTCAGATCAACATTATGATATAGGGAGATATGGTGATGATGATGCAAGGTCATTTGCCAAAAGGTGTTTCTCAGATGGAAGCATTACTCGCGACAATTCTACACCTATGTCAACGCCAAATCCAAAGCTTGAAAATTTCTCAAAGCTAGGTTTGCAGGACCAATCAGAAGGAAGCAATACTTTTTTTGAGTCATCACCTGAAATATCTACTTCTTCTGGGACTGAGAGTGACATGTCATTTTCAAGGTACACTCCCTCAATGCCTCATAAACAGCTTTTTGGAGACATACAAAGAGAGCGTTTCTTTCATAGTGATCATATTTCCTATTCTGGACATGGAGATTCATTCTGCTCTTCCAACTTTATTGACCTGGATTGGCTGTCTTCTTCAGGAAATTCATGTGAAGAAGAGCCATTTGAGAGGTTATCAATTACCAACTCTTCGATTGCTAGGCTTTCTTCCAAAAATGTTATCAATGGAGTTATTACGGGAGGAGATACTCCCTCCACTAGTGATTTGGACTCAAACACTAAGGGAAGGGAGCAAACTGGGTCAGAGTTATCCAAACGTGATGCCCGGCCCAAAGTTCTAGAGGAATTTCCTGATACTTTTGTAAACTGGGTGACTAATGGACAGACACTTTGCAATTGA

Predicted protein sequences of Glyma15g20210

Limit To All Plant Sequences

>Glyma15g20210.1   sequence type=predicted peptide   gene model=Glyma15g20210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSENEPSSHSSPPAHACLHKFRLYETLSNFYMIGRDKSRTYWRVLKIDRLDPSELNVLEDSTTYTESECSDLLRRIHEGNRSTGGLKFVTTCFGIVGFIKFLGPYYMLLITKRRQIGAICGNTVYAISKSEMIPLQNSSVHSSITDSINENRYKKLLCMVDLTKDFFFSYSYHIMRSLQKNLCDSETGHVLYETMFVWNESLTREIRNHLQNTIWTVALVYGFFKQETLTISGREFILTLVARRSRHYAGTRYLRRGVNDEGRVANDVETEQIVFEDVPEGLPVQICSVVQNRGSIPLFWSQETSRLNLKPDIILSKKDQNYEATRLHFENLVKRYGHPVIILNLIKSHERKPRESILRSEFGKAIDFINKDLSQENRLRFLHWDLKHFQSKATNVLLLLGKVAAYALTLTGFLYCQVPPTPRPEDCIKCPSISFAYGNIDKGSFQPTRQSDVNNEDGNTLERKPSGENNLANGNHFVKPPMFQRGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALGIIDHPKIDLDDPLSDGLMGFYERMGDTLAHQYGGSAAHKKIFSERRGQWKTATQSQEFFRTLQRYYSNAYMDAEKQNAINIFLGHFQPQLGKPALWDLSSDQHYDIGRYGDDDARSFAKRCFSDGSITRDNSTPMSTPNPKLENFSKLGLQDQSEGSNTFFESSPEISTSSGTESDMSFSRYTPSMPHKQLFGDIQRERFFHSDHISYSGHGDSFCSSNFIDLDWLSSSGNSCEEEPFERLSITNSSIARLSSKNVINGVITGGDTPSTSDLDSNTKGREQTGSELSKRDARPKVLEEFPDTFVNWVTNGQTLCN*

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