Glyma15g20200 - SoyBase

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Report for Sequence Feature Glyma15g20200

Feature Type:	gene_model
Chromosome:	Gm15
Start:	18000477
stop:	18002377
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22600	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:11900211-11901032 REVERSE LENGTH=273	SoyBase	E_val: 2.00E-64	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MHK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MHK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g182700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20200

Limit To All Plant Sequences

>Glyma15g20200.2   sequence type=CDS   gene model=Glyma15g20200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAAGCCGTGGCGCCACTCTTCAGCCGTAGCCACAAGCAGCAGTCTCGGTCCTTCAAGGAGTACTACGCAGAGTGGTTCAACACCCTCAAGAACAACCACCTCCCCCTCCTCCGCCACTCCATCTCCGGCGACTCCCTCACCATTCTCTCCACCCACGTCGAGATGCTCCACCAGCACTTCCAGTCCTACTACCACGCCCTCGACGCCGCCGCCACCTCCGACGCCTCCCAGCTCCTCTCCCAGGAGTGGCGCAACTCCCTCGAGAAACCCCTCCTCTGGCTCGGCGACCTCCACCCCTCCCTCTTCACCAACCTCGCCCGCTCCTTCCTCCAAGACGAACATTCCCCCGACCACACCGACGACGAAGATGATTCCGATCCCCACCACCACCACCACCACCACCACCACTTTCCCCTCCCCGAACGCCCCTGGCAGGTGGCGATGGCCTGGCGCAACCCTTCGGAGGCTCTAACTGCCCGCATGGACCAGATCGAGTGCGGCCTCCGCGTGATTGTACCGGCCCTTTCGGACCGCCTGAAACACGCGGAGGACGCATTCGTGGGCCGCGTAATGGGGAACTGGTTCCGCTGCCGTGACCATCATCACAAGGGCAGCGGAGCCTCGTCCAAGGTTGCTGTGGGGGCCGATGTGAAGGCCCACATGGAGGAGCTCGTGAGCGTGTTCCTCTACGCAAACCGCCTCAGGAGGAACGTGCTTGTGGACATACTTAGTGCCACCACCGTTTACCAGGCCGCGCTGTTTCTTGAAGGGTTGGCCCAGTTTCTTATTGGGTTCAGGGACCATGAGTTGGTGAACGCCGTTGAACACTGCAAGGCCTTGCCTCTCGCAAACAATAAACAGTGTCGTCCTCGCTGCCATTGA

Predicted protein sequences of Glyma15g20200

Limit To All Plant Sequences

>Glyma15g20200.2   sequence type=predicted peptide   gene model=Glyma15g20200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKAVAPLFSRSHKQQSRSFKEYYAEWFNTLKNNHLPLLRHSISGDSLTILSTHVEMLHQHFQSYYHALDAAATSDASQLLSQEWRNSLEKPLLWLGDLHPSLFTNLARSFLQDEHSPDHTDDEDDSDPHHHHHHHHHFPLPERPWQVAMAWRNPSEALTARMDQIECGLRVIVPALSDRLKHAEDAFVGRVMGNWFRCRDHHHKGSGASSKVAVGADVKAHMEELVSVFLYANRLRRNVLVDILSATTVYQAALFLEGLAQFLIGFRDHELVNAVEHCKALPLANNKQCRPRCH*

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