Glyma15g20166 - SoyBase

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Report for Sequence Feature Glyma15g20166

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17909967
stop:	17914624
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20166

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51690	AT	Annotation by Michelle Graham. TAIR10: PIF1 helicase \| chr3:19176731-19178107 REVERSE LENGTH=331	SoyBase	E_val: 3.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0987	KOG	DNA helicase PIF1/RRM3	JGI		ISS
PTHR10492	Panther	HELICASE-RELATED	JGI		ISS
PF05970	PFAM	PIF1 helicase	JGI		ISS
UniRef100_G7J1F9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Helicase-like protein n=1 Tax=Medicago truncatula RepID=G7J1F9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337699	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337699 related cluster n=1 Tax=unknown RepID=UPI0002337699	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20166

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g20166 not represented in the dataset	Glyma15g20166 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20166 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g182400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g20166

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g20166

Limit To All Plant Sequences

>Glyma15g20166.1   sequence type=CDS   gene model=Glyma15g20166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTCTGATCTTGGTGATCAACTAATGCAATGTAGATATTGTAATGCACAAATATGGTATGATGAGAGAATATCAAAATATAAAAATTGTGCGGGTCCAAGGTTCAGCTTATGCTGTGGAGATGGCAAAGTTAAACTTCCATTATTACAAAATCCACCCCAATATCTCCAACAACTTCTGTTTGATGATAATACAATTGATAGTAAAAATTATCAACATAACTTACGAGCATACAACATGATTCAATATTCTGGAATTCAAGGCCATATTGTCTCAAGTTTAAGTCACATGCTGGATGAACACAATGCCCATGCTAAAAGTTTTAGGATGGCCAGGGATATATTGGCAGATGATCAAGCCGATAATATCAAATTGCAACTGATAGCTGCTCGGGAAAAAGATGGTCGTGTATATGATATGCCAAATGTTCCCAAAATTGCTGTACTTATTGTTGGTGATTTTCATCCAGGCTCAAAAAGAGATATTATTGTTGAAACTCAAAATGGAGAATTACAAAGAATCCATGAACTACACCCTAGCTATCTACCACTACAGTACCCTCTACTATTTCCTTATGGAGAAGATGGATATAGAGCTGACATACTTCACCGTTCTACTTCATCCAACAAAAAAAGAAAGCGAAATTGTCTAACAATGAGAGAGTGCACAAATTTATTTCATTCTCGAAAATTATTTCAACAATTCATTGTTGAAGGTTATACCACGGTTGAATTTGAAAGACTTAGCTACATCAGAAACAACCAAAAGAAACTTAGAGTTGACAAGTATTGTAGCTTACAAAATTCATTGGATACTGGAACAGCTAAAGGCTTAACCAAAGGAAAAAGAGTCATCTTACCTTCAACATTTGTTGGGAGCCCACATTATATGGATCAACTTTACTTTGATGGTATGACAATATGCAGTCATGTTGGTTTCCCAAATCTTTTTATTACTCTAACCTGTAATCCAAATTGGCCTGAAATTCGTAGATTACTTTCACCTTTGAATCTCAAACCAACAGACAGACTAGACATTGTGTCACGAATTTTCAGATTGAAATATGAACAAATGCTCTCAGACTTAACAAAGGGTCAGTTACTCGGAAAAGTCGTTGCATGCAATAAATATCCATCTGCAACTGACATTGACCAGATAATATCAACAGAAATACCTTCCCATGAAGATGACCCAGAACTGTACAGATTGGTGCAAAACCATATGATACATGGCCCATGTGGAATTTTGCAACCTAACTCTCTATATATGAAAGAAGGAAAATACAGTCGTTTTTATCCTAAACAATTTCAGCCTCAAACTCTTTTGGATTCAAACGGTTACCCACTTTTTCGCAGAAGAAACAATGTACCTTACAATCCAAAATTACTGAAAAAATATCAGGCACATATAAATATTGAATGGTGTAACCAAAGTACTTCAATCAAATATTTATTTAAATACATAAACAAAGGTTATGACAGAGTGACTGCTGTTATGGTTTATAATAGCAATGACACAGCTCAAAATGTTAACATTCAAAATGACGAACTTAAAGAATATCTAGACTGCAGATACATTTCTCCCTGTGAAGCTGCTTGGAGAATATTTGCTTTTCCGATCCACGGGAGAAAGCCTGCTGTTGAGAGATTGCATTTTCATCTTCCAGGTCAACACATTGTTCTTTACGAAGATCATGATGATATAGATGATGTGCTATCCAAGCCAAGCATTTCAAATTCAAAATTTCTAGCTTGGGTGAACACCAATAAATGTTTTGCTGAAGGCAGGAGTCTTACTTATTCACAATTTGTGTCAAAGTTTGTATATAATAAAACAAACAGATCATGGCAACTTAGGAAAAAAAGATATACTATTGGAAGACTCATATGGGTGCCACCAACCACAGGAGAATTGTTTTATTTAAGAATGATGCTTGGATATCAGAACTGTTGCAAATACCAATATGCAACATATAGAGAAGCATGTTTTGCCATGAGTTTTTTACAAGATGATAGAGAATATGTTGAAGCAATGAAAGAGGCTAAGGATTGGGGCACAACTAATTATCTAAGGAAATTGTTTGTATTAATCCTATTAACAGGTGTCATGAGCAAACCTGAAGAAGTTTGGAACCAATGTTGGCATTTGCTGGCTGATGACATTGCATATCGACATAGCAGATCAACAATGAACCCAGAATTGCATATCAATGACGATACTCTTAGAAATTTGACATTGATTGAAATTGAACAACTATTGCACATAAATCAAAGATCACTGAAAGACTATCCTACAATGCCATATCCTCAGGATGAACAAAAAACAATTTACAATAGAATTATCCAAGTTGTCAACAACAATGAAGGTGGGATGTTTTTCCTATACAGATTTGGAGGCACAGGAAAAACATTCATATGGAGAACATTGACAAGTTCATTGAGAGCAGACAATCAAATTGTTATTGTAGTTGCTTCTAGCGGCATAGCTTCTCTATTATTACCAGGAGGCAGAACTGCACATTCCAGATTTAAGATTCATGTACCAATTTTTGAAGACTCAACATGCAACATCCATCAAGGGACCCAATTAGCAGAATTGCTAAACCAGACAAGTCTAATAATTTGGGATGAAGCACCAATGGCCCACAAATTTTGTTTTGAAGCACTTGATCAAAGCTTAAGAGACGTTATCACAAATAAATCAAACTCCAATCAAATCTTTGGAGGCCAAGTTATAATATTCAGTGGAGATTTTCGCCAAATACTACCAGTTATCCTAAGAGGAAGTCATGAAAATGATGGTTATGCTACAATTGAAATTCCTGCCCACCTACTCATTACTGAATATGATGATCCAATTAGTGCTATAGTCAAATCAACATTCCCAGACTTACATCAGCACCACAATAATCCTCAATTAGCTTCAACAAATGAAACGGTAGAACAGATAAATGATTATGTACTATCCTTCATTCCAGGTAATTATCTCATTACTTATTTAATTTCCATTTCTTCCATTACAAATATGAGCACTGAAATTGGAATTTTACAAACCATAGGTGACCACATGGAATATCTAAGCTCTGATTTGGTTGACAAATCAGAAACCATTGAAGATTCCTATTTCCAATCAATTACTACTGAATTCCTTAATTCATTGACCACATTCGGTTTTCCAACTCATTCTATCAAGCTTAAAATTGGAAGTCCTATAATGCTCTTAAGAAACCTCGACCAAAATCAAGGCCTGTGTAATGGTACTAGATTAGTAGTAACAAGACTGGCAAAACATGTAATTGCAACAGAAATTATTTCAGGCAAAAACATTGGCTTCAGTGTTTATATTCCAAGAATGTCAATGTCCCCTTCACAATCACCATGA

Predicted protein sequences of Glyma15g20166

Limit To All Plant Sequences

>Glyma15g20166.1   sequence type=predicted peptide   gene model=Glyma15g20166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YSDLGDQLMQCRYCNAQIWYDERISKYKNCAGPRFSLCCGDGKVKLPLLQNPPQYLQQLLFDDNTIDSKNYQHNLRAYNMIQYSGIQGHIVSSLSHMLDEHNAHAKSFRMARDILADDQADNIKLQLIAAREKDGRVYDMPNVPKIAVLIVGDFHPGSKRDIIVETQNGELQRIHELHPSYLPLQYPLLFPYGEDGYRADILHRSTSSNKKRKRNCLTMRECTNLFHSRKLFQQFIVEGYTTVEFERLSYIRNNQKKLRVDKYCSLQNSLDTGTAKGLTKGKRVILPSTFVGSPHYMDQLYFDGMTICSHVGFPNLFITLTCNPNWPEIRRLLSPLNLKPTDRLDIVSRIFRLKYEQMLSDLTKGQLLGKVVACNKYPSATDIDQIISTEIPSHEDDPELYRLVQNHMIHGPCGILQPNSLYMKEGKYSRFYPKQFQPQTLLDSNGYPLFRRRNNVPYNPKLLKKYQAHINIEWCNQSTSIKYLFKYINKGYDRVTAVMVYNSNDTAQNVNIQNDELKEYLDCRYISPCEAAWRIFAFPIHGRKPAVERLHFHLPGQHIVLYEDHDDIDDVLSKPSISNSKFLAWVNTNKCFAEGRSLTYSQFVSKFVYNKTNRSWQLRKKRYTIGRLIWVPPTTGELFYLRMMLGYQNCCKYQYATYREACFAMSFLQDDREYVEAMKEAKDWGTTNYLRKLFVLILLTGVMSKPEEVWNQCWHLLADDIAYRHSRSTMNPELHINDDTLRNLTLIEIEQLLHINQRSLKDYPTMPYPQDEQKTIYNRIIQVVNNNEGGMFFLYRFGGTGKTFIWRTLTSSLRADNQIVIVVASSGIASLLLPGGRTAHSRFKIHVPIFEDSTCNIHQGTQLAELLNQTSLIIWDEAPMAHKFCFEALDQSLRDVITNKSNSNQIFGGQVIIFSGDFRQILPVILRGSHENDGYATIEIPAHLLITEYDDPISAIVKSTFPDLHQHHNNPQLASTNETVEQINDYVLSFIPGNYLITYLISISSITNMSTEIGILQTIGDHMEYLSSDLVDKSETIEDSYFQSITTEFLNSLTTFGFPTHSIKLKIGSPIMLLRNLDQNQGLCNGTRLVVTRLAKHVIATEIISGKNIGFSVYIPRMSMSPSQSP*

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