Glyma15g20090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g20090

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17751683
stop:	17763942
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g20090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19230	AT	Annotation by Michelle Graham. TAIR10: Riboflavin synthase-like superfamily protein \| chr1:6644189-6649149 FORWARD LENGTH=926	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050664	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	SoyBase	N/A	ISS
PTHR11972	Panther	NADPH OXIDASE	JGI		ISS
PTHR11972:SF5	Panther	NADPH OXIDASE-RELATED	JGI		ISS
PF01794	PFAM	Ferric reductase like transmembrane component	JGI		ISS
PF08022	PFAM	FAD-binding domain	JGI		ISS
PF08414	PFAM	Respiratory burst NADPH oxidase	JGI		ISS
UniRef100_B9RR53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Respiratory burst oxidase, putative n=1 Tax=Ricinus communis RepID=B9RR53_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B009	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B009 related cluster n=1 Tax=unknown RepID=UPI000233B009	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g20090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g20090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g20090

Limit To All Plant Sequences

>Glyma15g20090.3   sequence type=transcript   gene model=Glyma15g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTGGCAGTACAAGTACAACTCGATGAAGAAGAAGCAATATATAAAGAATGTGTCTGTGGTGTCTGCTATTTGAAATTTTTGAGTAAAAAAGAATACAGAGAAAATGAAGGATCCCATTTCCCAACTACTACTCTCGTAGGTGCGGCAAGACCACATTGGCGTTGAAATCGTGTGCGCAAATTCGTTGAGAGGTGTTTGTCTTGTTTTCCAACCCATTGCGTTTTCTTTTCTTTTTCTTTCTTTTTAATACAGAAAAAAAAAAACACCTCCACGCCCAAACGTGTGAACCAAACACCCCTCTCTCTCTTGCACTACTCAAACCTTCTACTTTCTCTCTCTAGAGAGAGAACAAAAAAAATCACTACAAGAATTATAGAAAGAAACAAAGAAAGTAAGAAACCGCATTGCCGAAAATTTTCGATGAGAACGTCGTCGTTTCGGAGATGCAGCACCGGCGAGTTTGATTTGCAGGAAAATTTTGATGCCTCGTCGCCGGTGACCGGAGGACACGCATATGGTGCTATGTTGCCGGTGTTCCTCAACGAGCTGAGGAGTAATCATCACAAGGAACTTGTGGAGATCACGCTGGAGCTTGAAAACGACGCCGTTGTGCTATGCAACGTGGCGCCGGCGCCATCTTCGGCTCCGAACGCTTCGCCGTCGTCGAGCACCACCGGAGGCGACGGAAACGGCGGGGGAGGTGGCGGAGGCGTAGCGCGGAGCCTTTCGATTACGTCGAGGATTCGGAGGAAGTTTCCGTGGCTACGTTCGATGTCGTCGGCGTCGGCGGAGAGTGTCACTGCCGCCTCTGCCGCAGTGGAGGATCCTCTGGTGACGGCGCGAAACGCGCGGAAAATGAGAGTGAAGCTTGAGCGGACGAGGTCGAGCGCGCAGAGAGCTTTGAAAGGGTTGAGATTCATCAGCAAGTCCGGCGAGGCCACGGAGGAGCTGTGGCGGAAGGTGGAAGAAAGGTTCAACGTGTTGGCCAAGGATGGCTTACTCGCTCGTGAAGACTTTGGTGAATGCATAGGAATGGAGGATTCGAAGGAATTTGCAGTGTGTATATTCGACGCATTGGTTCGAAGGAAGGAAAGGAGAGTGAGCAGCATAAACAGAGAAGAGTTGCATGAGTTCTGGTTGCAAATTTCAGATCAGAGCTTTGATGCTCGGCTTCAGATTTTCTTTGACATGGCAGATAGTAATGAAGACGGAAGAATTACTAGGGAGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCCGCAAACAAGCTATCGAAGCTAAAAGAACAAGCTGAAGGATACGCCGCGTTAATAATGGAAGAATTAGACCCAGAAAACCTGGGTTATATCGAGATCATTGCATTCGCCATAGCAGTTGGAATCGCCGTTCATGCAGGCAATCATCTGGCATGTGATTTCCCCCTCCTCGTAAACTCATCTCCAGAAAAATTTTCACTTATATCTTCAGATTTCCACAACAAAAGACCCACATACAAATCCCTTCTGACCGGCGTCGAAGGCGTAACCGGAATCTCAATGGTTGTTTTGATGGCTATCTCTTTCACTTTGGCCACTCACCACTTCCGGAGAAACGCACTCAGGCTTCCTTCACCCTTCAACAGATTGACAGGTTTCAATGCGTTCTGGTACTCTCACCACCTCTTTGGTCTGGTCTATGTTCTGCTTCTCGTCCATGGAACGTTCTTGTATTTGACCCATCGGTGGTACCAGAAAACGACGTGGATGTATATCTCTGTTCCACTGTTGCTGTACCTTGCTGAGCGTACTCTACGCACTCGTAGATCAGCACATTATACAGTAAAAATTCTGAAGGTTTCAGGACTACCGGGAAATGTATTCAGCTTACTGATGTCCAAGCCTAATGGATTTAAGTACAAAAGTGGACAATACATATTTTTACAATGCCCAAAAATCTCTCCGTTTGAATGGCACCCATTCTCCATTACCTCAGCCCCAGGAGATGACTGCCTAAGTGTTCACATTCGCACAGTAGGAGACTGGACCCAAGAACTTAAGCATCTTCTCACAAAAGAAGATGACAAATTACCTTCAGTTAATTGTCATGCAAAGTTTGGTGAACTAATGCAACTGGATCAAAGAGGGTAA

Coding sequences of Glyma15g20090

Limit To All Plant Sequences

>Glyma15g20090.2   sequence type=CDS   gene model=Glyma15g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGTCGTCGTTTCGGAGATGCAGCACCGGCGAGTTTGATTTGCAGGAAAATTTTGATGCCTCGTCGCCGGTGACCGGAGGACACGCATATGGTGCTATGTTGCCGGTGTTCCTCAACGAGCTGAGGAGTAATCATCACAAGGAACTTGTGGAGATCACGCTGGAGCTTGAAAACGACGCCGTTGTGCTATGCAACGTGGCGCCGGCGCCATCTTCGGCTCCGAACGCTTCGCCGTCGTCGAGCACCACCGGAGGCGACGGAAACGGCGGGGGAGGTGGCGGAGGCGTAGCGCGGAGCCTTTCGATTACGTCGAGGATTCGGAGGAAGTTTCCGTGGCTACGTTCGATGTCGTCGGCGTCGGCGGAGAGTGTCACTGCCGCCTCTGCCGCAGTGGAGGATCCTCTGGTGACGGCGCGAAACGCGCGGAAAATGAGAGTGAAGCTTGAGCGGACGAGGTCGAGCGCGCAGAGAGCTTTGAAAGGGTTGAGATTCATCAGCAAGTCCGGCGAGGCCACGGAGGAGCTGTGGCGGAAGGTGGAAGAAAGGTTCAACGTGTTGGCCAAGGATGGCTTACTCGCTCGTGAAGACTTTGGTGAATGCATAGGAATGGAGGATTCGAAGGAATTTGCAGTGTGTATATTCGACGCATTGGTTCGAAGGAAGGAAAGGAGAGTGAGCAGCATAAACAGAGAAGAGTTGCATGAGTTCTGGTTGCAAATTTCAGATCAGAGCTTTGATGCTCGGCTTCAGATTTTCTTTGACATGGCAGATAGTAATGAAGACGGAAGAATTACTAGGGAGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCCGCAAACAAGCTATCGAAGCTAAAAGAACAAGCTGAAGGATACGCCGCGTTAATAATGGAAGAATTAGACCCAGAAAACCTGGGTTATATCGAGCTGTGGCAGCTAGAAATGTTGTTGCTAGAAAAGGATAGGTACATGAACTACAGCAGACAACTCAGCACCGCAAGTGTGAATTGGAGTCAAAATATGACTGATTTGAGGCCCAAAAATGAGATACAAAGATTCTGCAGAACCCTTCAATGTCTTGCATTAGAGTATTGGAGAAGGGGCTGGATTTTGTTACTGTGGTTGGTTACCACTGCTTGCCTATTTGCCTGGAAATTTTACCTGTATAGAAACAGATCAACTTTCCAAGTGATGAGCTACTGCATACCAATAGCTAAGGGTGCTGCAGAGACACTGAAGCTCAACATGGCTCTTATTCTCTTACCAGTTTGTAGGAACACATTGACATGGCTTCGTTCCACAGGAGCCAGGAAATTTGTCCCTTTTGATGACAACATTAATTTCCACAAGATCATTGCATTCGCCATAGCAGTTGGAATCGCCGTTCATGCAGGCAATCATCTGGCATGTGATTTCCCCCTCCTCGTAAACTCATCTCCAGAAAAATTTTCACTTATATCTTCAGATTTCCACAACAAAAGACCCACATACAAATCCCTTCTGACCGGCGTCGAAGGCGTAACCGGAATCTCAATGGTTGTTTTGATGGCTATCTCTTTCACTTTGGCCACTCACCACTTCCGGAGAAACGCACTCAGGCTTCCTTCACCCTTCAACAGATTGACAGGTTTCAATGCGTTCTGGTACTCTCACCACCTCTTTGGTCTGGTCTATGTTCTGCTTCTCGTCCATGGAACGTTCTTGTATTTGACCCATCGGTGGTACCAGAAAACGACGTGGATGTATATCTCTGTTCCACTGTTGCTGTACCTTGCTGAGCGTACTCTACGCACTCGTAGATCAGCACATTATACAGTAAAAATTCTGAAGGTTTCAGGACTACCGGGAAATGTATTCAGCTTACTGATGTCCAAGCCTAATGGATTTAAGTACAAAAGTGGACAATACATATTTTTACAATGCCCAAAAATCTCTCCGTTTGAATGGCACCCATTCTCCATTACCTCAGCCCCAGGAGATGACTGCCTAAGTGTTCACATTCGCACAGTAGGAGACTGGACCCAAGAACTTAAGCATCTTCTCACAAAAGAAGATGACAAATTACCTTCAGTTAATTGTCATGCAAAGTTTGGTGAACTAATGCAACTGGATCAAAGAGGGTAA

>Glyma15g20090.3   sequence type=CDS   gene model=Glyma15g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGTCGTCGTTTCGGAGATGCAGCACCGGCGAGTTTGATTTGCAGGAAAATTTTGATGCCTCGTCGCCGGTGACCGGAGGACACGCATATGGTGCTATGTTGCCGGTGTTCCTCAACGAGCTGAGGAGTAATCATCACAAGGAACTTGTGGAGATCACGCTGGAGCTTGAAAACGACGCCGTTGTGCTATGCAACGTGGCGCCGGCGCCATCTTCGGCTCCGAACGCTTCGCCGTCGTCGAGCACCACCGGAGGCGACGGAAACGGCGGGGGAGGTGGCGGAGGCGTAGCGCGGAGCCTTTCGATTACGTCGAGGATTCGGAGGAAGTTTCCGTGGCTACGTTCGATGTCGTCGGCGTCGGCGGAGAGTGTCACTGCCGCCTCTGCCGCAGTGGAGGATCCTCTGGTGACGGCGCGAAACGCGCGGAAAATGAGAGTGAAGCTTGAGCGGACGAGGTCGAGCGCGCAGAGAGCTTTGAAAGGGTTGAGATTCATCAGCAAGTCCGGCGAGGCCACGGAGGAGCTGTGGCGGAAGGTGGAAGAAAGGTTCAACGTGTTGGCCAAGGATGGCTTACTCGCTCGTGAAGACTTTGGTGAATGCATAGGAATGGAGGATTCGAAGGAATTTGCAGTGTGTATATTCGACGCATTGGTTCGAAGGAAGGAAAGGAGAGTGAGCAGCATAAACAGAGAAGAGTTGCATGAGTTCTGGTTGCAAATTTCAGATCAGAGCTTTGATGCTCGGCTTCAGATTTTCTTTGACATGGCAGATAGTAATGAAGACGGAAGAATTACTAGGGAGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCCGCAAACAAGCTATCGAAGCTAAAAGAACAAGCTGAAGGATACGCCGCGTTAATAATGGAAGAATTAGACCCAGAAAACCTGGGTTATATCGAGATCATTGCATTCGCCATAGCAGTTGGAATCGCCGTTCATGCAGGCAATCATCTGGCATGTGATTTCCCCCTCCTCGTAAACTCATCTCCAGAAAAATTTTCACTTATATCTTCAGATTTCCACAACAAAAGACCCACATACAAATCCCTTCTGACCGGCGTCGAAGGCGTAACCGGAATCTCAATGGTTGTTTTGATGGCTATCTCTTTCACTTTGGCCACTCACCACTTCCGGAGAAACGCACTCAGGCTTCCTTCACCCTTCAACAGATTGACAGGTTTCAATGCGTTCTGGTACTCTCACCACCTCTTTGGTCTGGTCTATGTTCTGCTTCTCGTCCATGGAACGTTCTTGTATTTGACCCATCGGTGGTACCAGAAAACGACGTGGATGTATATCTCTGTTCCACTGTTGCTGTACCTTGCTGAGCGTACTCTACGCACTCGTAGATCAGCACATTATACAGTAAAAATTCTGAAGGTTTCAGGACTACCGGGAAATGTATTCAGCTTACTGATGTCCAAGCCTAATGGATTTAAGTACAAAAGTGGACAATACATATTTTTACAATGCCCAAAAATCTCTCCGTTTGAATGGCACCCATTCTCCATTACCTCAGCCCCAGGAGATGACTGCCTAAGTGTTCACATTCGCACAGTAGGAGACTGGACCCAAGAACTTAAGCATCTTCTCACAAAAGAAGATGACAAATTACCTTCAGTTAATTGTCATGCAAAGTTTGGTGAACTAATGCAACTGGATCAAAGAGGGTAA

Predicted protein sequences of Glyma15g20090

Limit To All Plant Sequences

>Glyma15g20090.2   sequence type=predicted peptide   gene model=Glyma15g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTSSFRRCSTGEFDLQENFDASSPVTGGHAYGAMLPVFLNELRSNHHKELVEITLELENDAVVLCNVAPAPSSAPNASPSSSTTGGDGNGGGGGGGVARSLSITSRIRRKFPWLRSMSSASAESVTAASAAVEDPLVTARNARKMRVKLERTRSSAQRALKGLRFISKSGEATEELWRKVEERFNVLAKDGLLAREDFGECIGMEDSKEFAVCIFDALVRRKERRVSSINREELHEFWLQISDQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMNYSRQLSTASVNWSQNMTDLRPKNEIQRFCRTLQCLALEYWRRGWILLLWLVTTACLFAWKFYLYRNRSTFQVMSYCIPIAKGAAETLKLNMALILLPVCRNTLTWLRSTGARKFVPFDDNINFHKIIAFAIAVGIAVHAGNHLACDFPLLVNSSPEKFSLISSDFHNKRPTYKSLLTGVEGVTGISMVVLMAISFTLATHHFRRNALRLPSPFNRLTGFNAFWYSHHLFGLVYVLLLVHGTFLYLTHRWYQKTTWMYISVPLLLYLAERTLRTRRSAHYTVKILKVSGLPGNVFSLLMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDDCLSVHIRTVGDWTQELKHLLTKEDDKLPSVNCHAKFGELMQLDQRG*

>Glyma15g20090.3   sequence type=predicted peptide   gene model=Glyma15g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTSSFRRCSTGEFDLQENFDASSPVTGGHAYGAMLPVFLNELRSNHHKELVEITLELENDAVVLCNVAPAPSSAPNASPSSSTTGGDGNGGGGGGGVARSLSITSRIRRKFPWLRSMSSASAESVTAASAAVEDPLVTARNARKMRVKLERTRSSAQRALKGLRFISKSGEATEELWRKVEERFNVLAKDGLLAREDFGECIGMEDSKEFAVCIFDALVRRKERRVSSINREELHEFWLQISDQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIEIIAFAIAVGIAVHAGNHLACDFPLLVNSSPEKFSLISSDFHNKRPTYKSLLTGVEGVTGISMVVLMAISFTLATHHFRRNALRLPSPFNRLTGFNAFWYSHHLFGLVYVLLLVHGTFLYLTHRWYQKTTWMYISVPLLLYLAERTLRTRRSAHYTVKILKVSGLPGNVFSLLMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDDCLSVHIRTVGDWTQELKHLLTKEDDKLPSVNCHAKFGELMQLDQRG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain