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Report for Sequence Feature Glyma15g20071

Feature Type:gene_model
Chromosome:Gm15
Start:17713849
stop:17715381
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g20071
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G42170AT Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696 SoyBaseE_val: 7.00E-40ISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR23272Panther BED FINGER-RELATED JGI ISS
PF05699PFAM hAT family dimerisation domain JGI ISS
UniRef100_G7K7Q6UniRef Annotation by Michelle Graham. Best UniRef hit: Oligoribonuclease n=1 Tax=Medicago truncatula RepID=G7K7Q6_MEDTR SoyBaseE_val: 9.00E-146ISS
UniRef100_G7K7Q6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Oligoribonuclease n=1 Tax=Medicago truncatula RepID=G7K7Q6_MEDTR SoyBaseE_val: 9.00E-146ISS

Expression Patterns of Glyma15g20071
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g20071 not represented in the dataset
Glyma15g20071 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g20071 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g181700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g20071
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g20071
>Glyma15g20071.1   sequence type=CDS   gene model=Glyma15g20071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGGGATTACAATTACTAGGGATTGTTGGAGTCCTTACATCAATGAAAAAAAGAAGTTGAAAAGTATGTTTACTAATTCAAATCAAGTTGTATGTCTCACAACTGATTGTTGGACTTCTGTTCAAAATTTGAGTTATCTTTGTCTTACTGTGCATTTCATTGATGAAAATTGGAAGTTGCATAAAAGGATTCTCAATTTTTGTCCATTGACAAATAACAAAGGGGAAACCATTGGAAAAAAAATTGAGAAATGCTTAGAGGGTTGGCTAATTGGTAGAGTTTTTAGTATCACAGTAGACAATGTTAGCTCTAATGATGTTGCAATATCTTACTTGAAAAGTGGAATAGAAGATTGGAACACAAATCCATTAAAAGAAGAAAAGTTGCATGTTAGGTATTGTGCACATATTTTAAATCTTGTGGTCAATGATGGATTGAAGGAGTATCATTCTTCAATAAGAAAAATTAGGAGTGCTGTTAAATATGTTCGTGCATCACCTGATCGCATGGATAGGTTCAAAATTTTCATCAAGGAAGCTAAGTTAGTGGAAAAATCTATTATGCAATTGGATGTTTCCACTAGGTTGAACTCCACCTACATAATGCTTGAAAGTGCATTGAAATTTCAGAAAGTATTTAAGAGATTGGGTGAAAAGTTTTCTAAATATGTGATTCTGAATGACAGTATTCCAAATAATGAGGATTGCAAAAACACAATATGCTTTACTAGATTCTCCAAAATAGTTTTTGATATTACTCATAAAGTTTCAAAGACTAATTTTGTGACTTCTATATATTTCAATGAACATTGCAAGGTATTACAAGCATTTCAGAAATGGATAAAGAGTTCTGACCCATTGTTTGGAAGCATGGCTGAAAATATGAAAGTTATAAAATATGATAAGTATTGGGGGAATGTTAAAAATATGAATATTTTGATCTTTGTTGTTGTAGTTCTTAATCCTCGGACTAAGTTTCAGTTTAAAGACATGAATCTTAATATCAATAATCATAAAAATGAAGTAGATTTGTATCTCATGGAGAGTTTGGAGAAGAAAAGTAATACTTTTGATATCTTGATGTGGTGGAAAGTTAATTCTAGCAAATATCCTATTCTTAGTCAAATTGCTTGGGATTTTTTGGAGCTCTCTTTCTCCCCAAAGATAGTTGAAGCATTGATTTGTACACAAAATTGGTGGCGATCCTCCCCATGGTCAACTAACATGAAGAGCTCATGGACGACATTGAAAGAATTGAAATAG
Predicted protein sequences of Glyma15g20071
>Glyma15g20071.1   sequence type=predicted peptide   gene model=Glyma15g20071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RGITITRDCWSPYINEKKKLKSMFTNSNQVVCLTTDCWTSVQNLSYLCLTVHFIDENWKLHKRILNFCPLTNNKGETIGKKIEKCLEGWLIGRVFSITVDNVSSNDVAISYLKSGIEDWNTNPLKEEKLHVRYCAHILNLVVNDGLKEYHSSIRKIRSAVKYVRASPDRMDRFKIFIKEAKLVEKSIMQLDVSTRLNSTYIMLESALKFQKVFKRLGEKFSKYVILNDSIPNNEDCKNTICFTRFSKIVFDITHKVSKTNFVTSIYFNEHCKVLQAFQKWIKSSDPLFGSMAENMKVIKYDKYWGNVKNMNILIFVVVVLNPRTKFQFKDMNLNINNHKNEVDLYLMESLEKKSNTFDILMWWKVNSSKYPILSQIAWDFLELSFSPKIVEALICTQNWWRSSPWSTNMKSSWTTLKELK*






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